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[user1@master ~]$ module load hdf5/hdf5-openmpi-gnu
This module will prepend the hdf5-openmpi-gnu bin and lib directories
to the PATH and LD_LIBRARY_PATH environment variables, respectively.
[user1@master ~]$ module load mpi/openmpi-interconnects-gnu
This module will prepend the openmpi-gnu bin, man and lib directories
to the PATH, MANPATH and LD_LIBRARY_PATH environment variables,
respectively.
[user1@master ~]$ mpirun --machinefile machines --prefix /opt/openmpi/gnu -mca btl openib ph5example
--------------------------------------------------------------------------
WARNING: No HCA parameters were found for the HCA that Open MPI
detected:
Hostname: 172.20.0.1
HCA vendor ID: 0x08f1
HCA vendor part ID: 23044
Default HCA parameters will be used, which may result in lower
performance. You can edit any of the files specified by the
btl_openib_hca_param_files MCA parameter to set values for your HCA.
NOTE: You can turn off this warning by setting the MCA parameter
btl_openib_warn_no_hca_params_found to 0.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: No HCA parameters were found for the HCA that Open MPI
detected:
Hostname: 172.20.0.2
HCA vendor ID: 0x08f1
HCA vendor part ID: 23044
Default HCA parameters will be used, which may result in lower
performance. You can edit any of the files specified by the
btl_openib_hca_param_files MCA parameter to set values for your HCA.
NOTE: You can turn off this warning by setting the MCA parameter
btl_openib_warn_no_hca_params_found to 0.
--------------------------------------------------------------------------
--------------------------------
Proc 0: *** testing PHDF5 dataset using split communicators...
--------------------------------
--------------------------------
Proc 1: *** testing PHDF5 dataset using split communicators...
--------------------------------
--------------------------------
Proc 1: *** testing PHDF5 dataset independent write...
--------------------------------
--------------------------------
Proc 0: *** testing PHDF5 dataset independent write...
--------------------------------
ADIOI_NFS_OPEN (line 55): **filenoexist ParaEg1.h5f--------------------------------
Proc 0: *** testing PHDF5 dataset collective write...
--------------------------------
ADIO_OPEN (line 273): **oremote_fail
MPI_FILE_CLOSE (line 51): **iobadfh
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5F.c line 1969 in H5Fcreate(): unable to create file
major(04): File interface
minor(17): Unable to open file
#001: H5F.c line 1726 in H5F_open(): unable to open file
major(04): File interface
minor(17): Unable to open file
#002: H5FD.c line 1045 in H5FD_open(): open failed
major(22): Virtual File Layer
minor(29): Unable to initialize object
#003: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_File_open failed
major(03): Internal HDF5 error
minor(78): Some MPI function failed
#004: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_ERR_IO: input/output error
major(03): Internal HDF5 error
minor(79): MPI Error String
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1099 in H5Dcreate(): not a location ID
major(01): Function arguments
minor(03): Inappropriate type
#001: H5G.c line 1928 in H5G_loc(): invalid object ID
major(01): Function arguments
minor(05): Bad value
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1099 in H5Dcreate(): not a location ID
major(01): Function arguments
minor(03): Inappropriate type
#001: H5G.c line 1928 in H5G_loc(): invalid object ID
major(01): Function arguments
minor(05): Bad value
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1266 in H5Dget_space(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5Shyper.c line 6040 in H5Sselect_hyperslab(): not a data space
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5Dio.c line 650 in H5Dwrite(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5Dio.c line 650 in H5Dwrite(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5S.c line 476 in H5Sclose(): not a data space
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1224 in H5Dclose(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1224 in H5Dclose(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5F.c line 2565 in H5Fclose(): not a file ID
major(01): Function arguments
minor(03): Inappropriate type
ADIOI_NFS_OPEN (line 55): **filenoexist ParaEg1.h5fMPI_FILE_CLOSE (line 51): **iobadfh
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5F.c line 1969 in H5Fcreate(): unable to create file
major(04): File interface
minor(17): Unable to open file
#001: H5F.c line 1726 in H5F_open(): unable to open file
major(04): File interface
minor(17): Unable to open file
#002: H5FD.c line 1045 in H5FD_open(): open failed
major(22): Virtual File Layer
minor(29): Unable to initialize object
#003: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_File_open failed
major(03): Internal HDF5 error
minor(78): Some MPI function failed
#004: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_ERR_NO_SUCH_FILE: no such file or directory
major(03): Internal HDF5 error
minor(79): MPI Error String
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1099 in H5Dcreate(): not a location ID
major(01): Function arguments
minor(03): Inappropriate type
#001: H5G.c line 1928 in H5G_loc(): invalid object ID
major(01): Function arguments
minor(05): Bad value
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1099 in H5Dcreate(): not a location ID
major(01): Function arguments
minor(03): Inappropriate type
#001: H5G.c line 1928 in H5G_loc(): invalid object ID
major(01): Function arguments
minor(05): Bad value
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1266 in H5Dget_space(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5Shyper.c line 6040 in H5Sselect_hyperslab(): not a data space
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5Dio.c line 650 in H5Dwrite(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5Dio.c line 650 in H5Dwrite(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5S.c line 476 in H5Sclose(): not a data space
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1224 in H5Dclose(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1224 in H5Dclose(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
--------------------------------
Proc 1: *** testing PHDF5 dataset collective write...
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5F.c line 2565 in H5Fclose(): not a file ID
major(01): Function arguments
minor(03): Inappropriate type
--------------------------------
--------------------------------
Proc 0: *** testing PHDF5 dataset independent read...
--------------------------------
--------------------------------
Proc 1: *** testing PHDF5 dataset independent read...
--------------------------------
ADIO_OPEN (line 273): **oremote_fail
MPI_FILE_CLOSE (line 51): **iobadfh
ADIOI_NFS_OPEN (line 55): **filenoexist ParaEg1.h5fADIOI_NFS_OPEN (line 55): **filenoexist ParaEg1.h5fHDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5F.c line 2049 in H5Fopen(): unable to open file
major(04): File interface
minor(17): Unable to open file
#001: H5F.c line 1726 in H5F_open(): unable to open file
major(04): File interface
minor(17): Unable to open file
#002: H5FD.c line 1045 in H5FD_open(): open failed
major(22): Virtual File Layer
minor(29): Unable to initialize object
#003: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_File_open failed
major(03): Internal HDF5 error
minor(78): Some MPI function failed
#004: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_ERR_IO: input/output error
major(03): Internal HDF5 error
minor(79): MPI Error String
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1163 in H5Dopen(): not a location
major(01): Function arguments
minor(03): Inappropriate type
#001: H5G.c line 1928 in H5G_loc(): invalid object ID
major(01): Function arguments
minor(05): Bad value
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1163 in H5Dopen(): not a location
MPI_FILE_CLOSE (line 51): **iobadfh
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 major(01): Function arguments
minor(03): Inappropriate type
#001: H5G.c line 1928 in H5G_loc(): invalid object ID
major(01): Function arguments
minor(05): Bad value
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1266 in H5Dget_space(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5Shyper.c line 6040 in H5Sselect_hyperslab(): not a data space
major(01): Function arguments
minor(03): Inappropriate type
MPI-process 1. Back trace follows.
#000: H5F.c line 2049 in H5Fopen(): unable to open file
major(04): File interface
minor(17): Unable to open file
#001: H5F.c line 1726 in H5F_open(): unable to open file
major(04): File interface
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5Dio.c line 562 in H5Dread(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
minor(17): Unable to open file
#002: H5FD.c line 1045 in H5FD_open(): open failed
major(22): Virtual File Layer
minor(29): Unable to initialize object
#003: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_File_open failed
major(03): Internal HDF5 error
minor(78): Some MPI function failed
#004: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_ERR_NO_SUCH_FILE: no such file or directory
major(03): Internal HDF5 error
minor(79): MPI Error String
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1163 in H5Dopen(): not a location
major(01): Function arguments
Dataset Verify failed at [0][0](row 0, col 0): expect 5, got 1
Dataset Verify failed at [0][1](row 0, col 1): expect 6, got 2
minor(03): Inappropriate type
Dataset Verify failed at [0][2](row 0, col 2): expect 7, got 3
Dataset Verify failed at [0][3](row 0, col 3): expect 8, got 4
Dataset Verify failed at [0][4](row 0, col 4): expect 9, got 5
Dataset Verify failed at [0][5](row 0, col 5): expect 10, got 6
Dataset Verify failed at [0][6](row 0, col 6): expect 11, got 7
Dataset Verify failed at [0][7](row 0, col 7): expect 12, got 8
Dataset Verify failed at [0][8](row 0, col 8): expect 101, got 9
Dataset Verify failed at [0][9](row 0, col 9): expect 102, got 10
#001: H5G.c line 1928 in H5G_loc(): invalid object ID
major(01): Function arguments
minor(05): Bad value
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1163 in H5Dopen(): not a location
major(01): Function arguments
minor(03): Inappropriate type
[more errors ...]
288 errors found in dataset_vrfy
Dataset Verify failed at [0][0](row 0, col 0): expect 5, got 1
Dataset Verify failed at [0][1](row 0, col 1): expect 6, got 2
Dataset Verify failed at [0][2](row 0, col 2): expect 7, got 3
Dataset Verify failed at [0][3](row 0, col 3): expect 8, got 4
Dataset Verify failed at [0][4](row 0, col 4): expect 9, got 5
Dataset Verify failed at [0][5](row 0, col 5): expect 10, got 6
Dataset Verify failed at [0][6](row 0, col 6): expect 11, got 7
#001: H5G.c line 1928 in H5G_loc(): invalid object ID
major(01): Function arguments
minor(05): Bad value
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1266 in H5Dget_space(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1.HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5Dio.c line 562 in H5Dread(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
Back trace follows.
#000: H5Shyper.c line 6040 in H5Sselect_hyperslab(): not a data space
major(01): Function arguments
minor(03): Inappropriate type
Dataset Verify failed at [0][7](row 0, col 7): expect 12, got 8
Dataset Verify failed at [0][8](row 0, col 8): expect 101, got 9
Dataset Verify failed at [0][9](row 0, col 9): expect 102, got 10
[more errors ...]
288 errors found in dataset_vrfy
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5D.c line 1224 in H5Dclose(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 #000: H5Dio.c line 562 in H5Dread(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
MPI-process 0. Back trace follows.
#000: H5D.c line 1224 in H5Dclose(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows.
#000: H5S.c line 476 in H5Sclose(): not a data space
major(01): Function arguments
Dataset Verify failed at [0][0](row 12, col 0): expect 17, got 1201
Dataset Verify failed at [0][1](row 12, col 1): expect 18, got 1202
Dataset Verify failed at [0][2](row 12, col 2): expect 19, got 1203
Dataset Verify failed at [0][3](row 12, col 3): expect 20, got 1204
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0.Dataset Verify failed at [0][4](row 12, col 4): expect 21, got 1205
Dataset Verify failed at [0][5](row 12, col 5): expect 22, got 1206
Dataset Verify failed at [0][6](row 12, col 6): expect 23, got 1207
Dataset Verify failed at [0][7](row 12, col 7): expect 24, got 1208
Dataset Verify failed at [0][8](row 12, col 8): expect 113, got 1209
--------------------------------
Proc 0: *** testing PHDF5 dataset collective read...
--------------------------------
Dataset Verify failed at [0][9](row 12, col 9): expect 114, got 1210
[more errors ...]
288 errors found in dataset_vrfy
Dataset Verify failed at [0][0](row 12, col 0): expect 17, got 1201
Back trace follows.
#000: H5F.c line 2565 in H5Fclose(): not a file ID
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5Dio.c line 562 in H5Dread(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
Dataset Verify failed at [0][1](row 12, col 1): expect 18, got 1202
Dataset Verify failed at [0][2](row 12, col 2): expect 19, got 1203
Dataset Verify failed at [0][3](row 12, col 3): expect 20, got 1204
Dataset Verify failed at [0][4](row 12, col 4): expect 21, got 1205
Dataset Verify failed at [0][5](row 12, col 5): expect 22, got 1206
Dataset Verify failed at [0][6](row 12, col 6): expect 23, got 1207
Dataset Verify failed at [0][7](row 12, col 7): expect 24, got 1208
Dataset Verify failed at [0][8](row 12, col 8): expect 113, got 1209
Dataset Verify failed at [0][9](row 12, col 9): expect 114, got 1210
[more errors ...]
288 errors found in dataset_vrfy
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1224 in H5Dclose(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5D.c line 1224 in H5Dclose(): not a dataset
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5S.c line 476 in H5Sclose(): not a data space
major(01): Function arguments
minor(03): Inappropriate type
HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows.
#000: H5F.c line 2565 in H5Fclose(): not a file ID
major(01): Function arguments
minor(03): Inappropriate type
--------------------------------
Proc 1: *** testing PHDF5 dataset collective read...
--------------------------------
===================================
PHDF5 tests finished with no errors
===================================