Close All Seeing Eye
In C:\Program Files\The All Seeing Eye\ open your filters.txt. Look for the following:
Quake 3: Arena\Urban Terror\v3.7
Group: Q3UTVER
Mutex: Q3UTVER
1 if g_modversion != "3.7" remove
And add this below it:
Quake 3: Arena\Urban Terror\v4.1
Group: Q3UTVER
Mutex: Q3UTVER
1 if g_modversion != "4.1" remove
Save the file and start All Seeing Eye, you should now have the new filters.
You can setup ASE to auto-load quake3.exe for PB-servers and ioUrbanTerror for the rest: In the main game options of ASE, select Quake 3 and point it to ioUrbanTerror.exe. Left-click the Punkbuster-on filter. Right click it and select 'custom config'. Click 'browse' and select your quake3.exe.