=============================================================================
== Running OSCAR install_cluster script Wed Sep 26 13:48:17 PDT 2007
=============================================================================
--> Checking if this is a supported platform
--> Running: "cd /opt/oscar-5.0/scripts && ./wizard_prep"
=============================================================================
== Running OSCAR wizard_prep script
=============================================================================
--> Bootstrapping OSCAR smart package manager
--> Checking OSCAR repositories existence.
smartly removing: tftp-server.i?86,lam
smartly installing: dhcp,gd,nfs-utils,openssh,openssh-clients,openssh-server,openssl,tcpdump,xinetd,httpd,php,expat,python,zlib,zlib-devel,shadow-utils,libcap,ntp
Cleaning up Everything
0 headers removed
0 packages removed
0 metadata files removed
0 cache files removed
0 cache files removed
--> Installing OSCAR wizard prerequisites
smartly installing: perl-XML-Parser,perl-XML-Simple,mysql,perl-DBD-MySQL,perl-DBI,mysql-server,perl-HTML-Tree,perl-Tk,perl-Qt
--> Installing wizard prereq share/prereqs/perl-XML-Parser
--> Successfully installed prereq share/prereqs/perl-XML-Parser
--> Installing wizard prereq share/prereqs/perl-XML-Simple
--> Successfully installed prereq share/prereqs/perl-XML-Simple
--> Installing wizard prereq packages/oda
--> Running prereq setup script for packages/oda
--> Checking status of MySQL server mysqld
1
Stopping MySQL: [FAILED]
Initializing MySQL database: [ OK ]
Starting MySQL: [ OK ]
--> Successfully installed prereq packages/oda
--> Installing wizard prereq share/prereqs/perl-HTML-Tree
--> Successfully installed prereq share/prereqs/perl-HTML-Tree
--> Installing wizard prereq share/prereqs/perl-Tk
--> Successfully installed prereq share/prereqs/perl-Tk
--> Installing wizard prereq share/prereqs/perl-Qt
--> Successfully installed prereq share/prereqs/perl-Qt
--> Locating _all_ OSCAR packages
--> Running package setup scripts for ALL packages
--> About to run /opt/oscar-5.0/packages/disable-services/scripts/setup for disable-services
Created: /opt/oscar-5.0/packages/disable-services/scripts/post_client_rpm_install
--> About to run /opt/oscar-5.0/packages/oda/scripts/setup for oda
This mysql has been already setup InnoDB table type
--> Checking status of MySQL server mysqld
0
--> mysqld already running
--> Successfully ran package setup scripts
--> Making sure there is an ODA database password
Checking for ODA database password file ... not found.
Generating a random password for the OSCAR database.
saved.
--> Initializing ODA database from package config.xml files
Starting the mysql database server ...
/etc/init.d/mysqld start
Starting MySQL: [ OK ]
Making sure that the mysql database server starts on subsequent boots ...
chkconfig mysqld on
Creating the OSCAR database ...
... OSCAR database successfully created.
Searching these directories for packages:
/opt/oscar-5.0/packages
/var/lib/oscar/packages
Checking for database existence of node oscar_server ...
Updating the hostname field in the oscar_server node to <oscarproto1.***.edu> ...
Updating the dns_domain field in the oscar_server node to <***.edu>
Checking for existence of node group oscar_clients ...
Checking for existence of node group all ...
Creating node group all ...
Checking for existence of node group Default_node ...
Creating node group Default_node ...
Processing /opt/oscar-5.0/packages/sync_files/config.xml for package sync_files ...
Writing a new Packages record for package sync_files
Processing /opt/oscar-5.0/packages/c3/config.xml for package c3 ...
Writing a new Packages record for package c3
Processing /opt/oscar-5.0/packages/oda/config.xml for package oda ...
Writing a new Packages record for package oda
Processing /opt/oscar-5.0/packages/lam/config.xml for package lam ...
Writing a new Packages record for package lam
Processing /opt/oscar-5.0/packages/apitest/config.xml for package apitest ...
Writing a new Packages record for package apitest
Processing /opt/oscar-5.0/packages/disable-services/config.xml for package disable-services ...
Writing a new Packages record for package disable-services
Processing /opt/oscar-5.0/packages/torque/config.xml for package torque ...
Writing a new Packages record for package torque
Processing /opt/oscar-5.0/packages/openmpi/config.xml for package openmpi ...
Writing a new Packages record for package openmpi
Processing /opt/oscar-5.0/packages/pvm/config.xml for package pvm ...
Writing a new Packages record for package pvm
Processing /opt/oscar-5.0/packages/maui/config.xml for package maui ...
Writing a new Packages record for package maui
Processing /opt/oscar-5.0/packages/loghost/config.xml for package loghost ...
Writing a new Packages record for package loghost
Processing /opt/oscar-5.0/packages/ntpconfig/config.xml for package ntpconfig ...
Writing a new Packages record for package ntpconfig
Processing /opt/oscar-5.0/packages/sge/config.xml for package sge ...
Writing a new Packages record for package sge
Processing /opt/oscar-5.0/packages/sc3/config.xml for package sc3 ...
Writing a new Packages record for package sc3
Processing /opt/oscar-5.0/packages/mta-config/config.xml for package mta-config ...
Writing a new Packages record for package mta-config
Processing /opt/oscar-5.0/packages/pfilter/config.xml for package pfilter ...
Writing a new Packages record for package pfilter
Processing /opt/oscar-5.0/packages/opium/config.xml for package opium ...
Writing a new Packages record for package opium
Processing /opt/oscar-5.0/packages/ganglia/config.xml for package ganglia ...
Writing a new Packages record for package ganglia
Processing /opt/oscar-5.0/packages/sis/config.xml for package sis ...
Writing a new Packages record for package sis
Processing /opt/oscar-5.0/packages/yume/config.xml for package yume ...
Writing a new Packages record for package yume
Processing /opt/oscar-5.0/packages/switcher/config.xml for package switcher ...
Writing a new Packages record for package switcher
Processing /opt/oscar-5.0/packages/base/config.xml for package base ...
Writing a new Packages record for package base
Processing /opt/oscar-5.0/packages/networking/config.xml for package networking ...
Writing a new Packages record for package networking
Processing /opt/oscar-5.0/packages/mpich/config.xml for package mpich ...
Writing a new Packages record for package mpich
Processing /opt/oscar-5.0/packages/netbootmgr/config.xml for package netbootmgr ...
Writing a new Packages record for package netbootmgr
Checking for existence of package set <Default>
--> Identified core packages: sync_files c3 oda apitest sc3 sis yume switcher base
--> Installing server core packages
--> Successfully installed server core RPMs
Updating the status of core packages from installable to installed
--> Done marking installed bits in ODA
--> Running post_server_install scripts for server core packages
[sis] Setting default installation mode to: systemimager-rsync
Stopping rsync daemon for systemimager: rsync.
Starting rsync daemon for systemimager: rsync.
[sis] Enabling systemimager-server-rsyncd
Stopping SystemImager's installation monitoring: si_monitor... stopped.
Starting SystemImager's installation monitoring: si_monitor... ok.
[sis] Enabling systemimager-server-monitord
--> Successfully ran server core package post_server_install scripts
--> Preparing for httpd export: /tftpboot/distro/redhat-el-ws-4-i386 /tftpboot/oscar/common-rpms,/tftpboot/oscar/rhel-4-i386
Exporting /tftpboot/distro/redhat-el-ws-4-i386 through httpd, http://oscarproto1.***.edu/repo/tftpboot/distro/redhat-el-ws-4-i386
Exporting /tftpboot/oscar/common-rpms through httpd, http://oscarproto1.***.edu/repo/tftpboot/oscar/common-rpms
Exporting /tftpboot/oscar/rhel-4-i386 through httpd, http://oscarproto1.***.edu/repo/tftpboot/oscar/rhel-4-i386
Restarting httpd
Stopping httpd: [FAILED]
Starting httpd: [ OK ]
--> Successfully ran OSCAR wizard_prep script
--> Successfully ran wizard_prep
=============================================================================
== Prerequisites installed
=============================================================================
--> OSCAR version: 5.0
--> Command line invocation: ./install_cluster eth1
--> Hostname: oscarproto1
--> DNS domain name: ***.edu
--> Network interface: eth1
--> Linux distribution: redhat-el-ws 4
--> Kernel version: 2.6.9-55.ELsmp
--> Architecture: i386
--> Running in directory: /opt/oscar-5.0
--> PATH: /usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/X11R6/bin:/root/bin:/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/local/sbin
--> Running: "./oscar_wizard install"
Building repositories with binary packages from the OSCAR tree /opt/oscar-5.0
Copying packages ...
from /opt/oscar-5.0/share/prereqs
from /opt/oscar-5.0/packages
from /var/lib/oscar/packages
cp: cannot stat `/var/lib/oscar/packages/*/distro/common-rpms/*.rpm': No such file or directory
Creating repository metadata
Creating repodata cache for /tftpboot/oscar/common-rpms
43/43 - packman-depman-rpms-2.8-1.noarch.rpm
Saving Primary metadata
Saving file lists metadata
Saving other metadata
Building repositories with binary packages from the OSCAR tree /opt/oscar-5.0
Copying packages ...
from /opt/oscar-5.0/share/prereqs
cp: cannot stat `/opt/oscar-5.0/share/prereqs/*/distro/rhel4-i386/*.rpm': No such file or directory
from /opt/oscar-5.0/packages
from /var/lib/oscar/packages
cp: cannot stat `/var/lib/oscar/packages/*/distro/rhel4-i386/*.rpm': No such file or directory
Creating repository metadata
Creating repodata cache for /tftpboot/oscar/rhel-4-i386
37/37 - perl-Tk-804.026-1.oscar.i686.rpm
Saving Primary metadata
Saving file lists metadata
Saving other metadata
=============================================================================
== Running step 2 of the OSCAR wizard: Configure selected OSCAR packages
=============================================================================
--> About to run /opt/oscar-5.0/packages/switcher/scripts/pre_configure for switcher
--> About to run /opt/oscar-5.0/packages/switcher/scripts/post_configure for switcher
Setting default for tag mpi ("lam-7.1.2")
Tag "mpi" does not seem to exist yet. Skipping.
--> Step 2: Completed successfully
=============================================================================
== Running step 4 of the OSCAR wizard: Build OSCAR client image
=============================================================================
--> Step 4: Identified distro of clients: rhel 4
--> Step 4: distro repo: /tftpboot/distro/redhat-el-ws-4-i386
--> Step 4: oscar repo: /tftpboot/oscar/common-rpms,/tftpboot/oscar/rhel-4-i386
--> Step 4: Using RPM list: /opt/oscar-5.0/oscarsamples/rhel-4-i386.rpmlist
Executing command: mksiimage -A --name oscarimage --location /tftpboot/oscar/common-rpms,/tftpboot/oscar/rhel-4-i386,/tftpboot/distro/redhat-el-ws-4-i386 --filename /opt/oscar-5.0/oscarsamples/rhel-4-i386.rpmlist --arch i686 --path /var/lib/systemimager/images/oscarimage --filename=/tmp/oscar-install-rpmlist.19360
Image build finished.
Added Disk Table for oscarimage based on /opt/oscar-5.0/oscarsamples/scsi.disk
Use of uninitialized value in pattern match (m//) at /usr/lib/systemimager/perl/SystemImager/Server.pm line 679, <$TEMPLATE> line 165.
Use of uninitialized value in pattern match (m//) at /usr/lib/systemimager/perl/SystemImager/Server.pm line 679, <$TEMPLATE> line 165.
Use of uninitialized value in pattern match (m//) at /usr/lib/systemimager/perl/SystemImager/Server.pm line 679, <$TEMPLATE> line 165.
Ran si_mkautoinstallscript
--> Step 4: Running: ./post_rpm_install oscarimage eth1
--> post_rpm_install: Making sure /dev/null is r/w for all
--> post_rpm_install: Syncing system files
--> post_rpm_install: Syncing user files
--> post_rpm_install: Running ssh setup
checking for host key file /etc/ssh/ssh_host_key ...
checking for host key file /etc/ssh/ssh_host_dsa_key ...
checking configuration file ssh_config ...
turning on ForwardX11 parameter in configuration file ssh_config ...
cp -fp ssh_config ssh_config.pre_ssh_install
... by adding a line
turning off StrictHostKeyChecking parameter in configuration file ssh_config ...
... by adding a line
turning off UsePrivilegedPort parameter in configuration file ssh_config ...
... by adding a line
checking configuration file sshd_config ...
turning on IgnoreRhosts parameter in configuration file sshd_config ...
cp -fp sshd_config sshd_config.pre_ssh_install
... by adding a line
turning on RhostsRSAAuthentication parameter in configuration file sshd_config ...
... by adding a line
turning on RSAAuthentication parameter in configuration file sshd_config ...
... by adding a line
setting up user root on this machine
the home directory for user root is /root
cd /root
ssh-keygen -t rsa -N '' -f /root/.ssh/id_rsa
Generating public/private rsa key pair.
Your identification has been saved in /root/.ssh/id_rsa.
Your public key has been saved in /root/.ssh/id_rsa.pub.
The key fingerprint is:
12:b8:7a:45:09:96:d8:d7:52:a3:8e:38:4b:64:51:2a root@oscarproto1.***.edu
echo ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAIEA6VMk69mQuPzoMqFQtcxGhRWxn9cOfAISqcFOibIhQXmtYdujVtwo3pWvGSJL8973vsXHJ6RySViKpkkT2tQapIyLp3XKM3ADoUmWXTZxBgfP4iNQ7UyevSspzXAZyRWpY5xtMSWsnlRgIDVYpWHXZIWcgdAkAIWKkHcys0fMUCc= root@oscarproto1.***.edu >> /root/.ssh/authorized_keys2
ssh-keygen -t dsa -N '' -f /root/.ssh/id_dsa
Generating public/private dsa key pair.
Your identification has been saved in /root/.ssh/id_dsa.
Your public key has been saved in /root/.ssh/id_dsa.pub.
The key fingerprint is:
9e:20:96:6e:90:a2:d9:12:26:e7:bd:19:7d:33:70:2a root@oscarproto1.***.edu
echo ssh-dss 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 root@oscarproto1.***.edu >> /root/.ssh/authorized_keys2
ssh-keygen -t rsa1 -N '' -f /root/.ssh/identity
Generating public/private rsa1 key pair.
Your identification has been saved in /root/.ssh/identity.
Your public key has been saved in /root/.ssh/identity.pub.
The key fingerprint is:
ee:3a:45:5c:9c:bd:f1:47:f8:a8:89:e9:4c:10:a4:64 root@oscarproto1.***.edu
echo 1024 35 134829611105241551672212837101861889182592582850904057844768254307334580258780446829889527503114239666883317245107738449188680492234658135569042789626617962596701508463007023509114558904283279014259797975463344910069316172567943050576772075872022034560320045967650630347411783483520105623225458693012378092827 root@oscarproto1.***.edu >> /root/.ssh/authorized_keys
chmod 600 /root/.ssh/authorized_keys /root/.ssh/authorized_keys2
checking/updating image /var/lib/systemimager/images/oscarimage ...
cp -fpr /etc/ssh /var/lib/systemimager/images/oscarimage/etc
copying ssh files for root to image /var/lib/systemimager/images/oscarimage
cp -fpr /root/.ssh /var/lib/systemimager/images/oscarimage/root
--> post_rpm_install: Running OSCAR package post_rpm_install scripts
--> About to run /opt/oscar-5.0/packages/sync_files/scripts/post_rpm_nochroot for sync_files
Created templates for image oscarimage in /opt/sync_files/templates/image/oscarimage
Make sure these files do not contain any user accounts.
Only system account IDs should be included!
--> About to run /opt/oscar-5.0/packages/disable-services/scripts/post_client_rpm_install for disable-services
Disabled kudzu in client image
Removed in client image: /etc/cron.daily/slocate.cron
--> About to run /opt/oscar-5.0/packages/ntpconfig/scripts/post_rpm_install for ntpconfig
--> About to run /opt/oscar-5.0/packages/sge/scripts/post_rpm_nochroot for sge
cp: cannot stat `/opt/sge/default': No such file or directory
Failed to copy directory /opt/sge/default to /var/lib/systemimager/images/oscarimage//opt/sge at /opt/oscar-5.0/packages/sge/scripts/post_rpm_nochroot line 43
Script /opt/oscar-5.0/packages/sge/scripts/post_rpm_nochroot exitted badly with exit code '1' at ./post_rpm_install line 85
Couldn't run post_rpm_nochroot for sge at ./post_rpm_install line 86
--> About to run /opt/oscar-5.0/packages/ganglia/scripts/post_rpm_nochroot for ganglia
configuring gmond for image=oscarimage
using per image config /opt/oscar-5.0/packages/ganglia/.configs/oscarimage/configurator.html
$VAR1 = 'udp_recv_channel__mcast_if';
$VAR2 = 'eth1';
$VAR3 = 'udp_recv_channel__port';
$VAR4 = '8649';
$VAR5 = 'udp_send_channel__mcast_if';
$VAR6 = 'eth1';
$VAR7 = 'cluster__name';
$VAR8 = 'OSCAR Proteome Cluster';
$VAR9 = 'udp_send_channel__port';
$VAR10 = '8649';
editing /var/lib/systemimager/images/oscarimage/etc/gmond.conf
[ganglia] Changed line: name = "OSCAR Proteome Cluster"
[ganglia] Changed line: owner = "Medicinal Chemistry Lab"
[ganglia] Changed line: port = 8649
[ganglia] Changed line: port = 8649
--> About to run /opt/oscar-5.0/packages/sis/scripts/post_rpm_nochroot for sis
configuring sis for image=oscarimage
--> About to run /opt/oscar-5.0/packages/base/scripts/post_rpm_nochroot for base
There were errors running post_rpm_install scripts. Please check your logs. at ./post_rpm_install line 91
at /usr/lib/systeminstaller/SystemInstaller/Tk/Image.pm line 485
Couldn't run postinstall at /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi/Tk.pm line 247
Stopping rsync daemon for systemimager: rsync.
Starting rsync daemon for systemimager: rsync.