Unnamed

hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 hmm_db
Sequence file:            escribible/sequence120
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Query sequence: GI|1705556|SP|P54670|CAF1_DICDI
Accession:      [none]
Description:    CALFUMIRIN-1 (CAF-1)

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
IS200.original                                         -121.7        6.5   1
IS605.uniq                                             -128.1        7.4   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
IS200.original    1/1       1   106 [.     1   155 []  -121.7      6.5
IS605.uniq        1/1       1   105 [.     1   152 []  -128.1      7.4

Alignments of top-scoring domains:
IS200.original: domain 1 of 1, from 1 to 106: score -121.7, E = 6.5
                   *->mdlrslsHtvyqckYHIVfvpKYRrkVlygkeikrdikeIlrelCer
                      m +                         +   i   +   l    ++
  GI|1705556     1    MAS-------------------------TQ-NIVEEVQKMLDTYDTN 21

                   kgveIiegevcpDHVHllVsiPPklSvSefmqyLKGk.......SslmiF
                   k  eI ++e++                     y KGk+  ++++S+  +F
  GI|1705556    22 KDGEITKAEAVE--------------------YFKGKkafnperSAIYLF 51

                   eqhpeLKkrYwgrhfWsrGyYvdTVGnGvt..........edtIksYIen
                   + +                   d  G+ +t ++  ++ + ++  k+Y e
  GI|1705556    52 QVYDK-----------------DNDGK-ITikelagdidfDKALKEYKEK 83

                   qlkedkkedqlqmkeksdpFtgeef<-*
                   q k  +k+    ++e ++ F ++ +
  GI|1705556    84 QAK--SKQQEAEVEEDIEAFILRHN    106

IS605.uniq: domain 1 of 1, from 1 to 105: score -128.1, E = 7.4
                   *->MgDekSlAHtrWnCKYHIVFAPKyRrkvlyGekrkeigsiLrkLCew
                      M  ++                          +   e+ + L
  GI|1705556     1    MASTQ--------------------------NIVEEVQKMLDTYDTN 21

                   KdvriLEaevcvDHiHmlveIPPKmSVSsfmGvLKGk.......SsLmlf
                   Kd +i  ae+                    + + KGk+  ++++S++ lf
  GI|1705556    22 KDGEITKAEA--------------------VEYFKGKkafnperSAIYLF 51

                   ekF.....gdLkfK..yrnrhFWcrGYYVDTVGkNeaiIqdYirhQde.e
                     ++++++g +  K+  +  +F              ++ ++Y   Q +++
  GI|1705556    52 QVYdkdndGKITIKelAGDIDF-------------DKALKEYKEKQAKsK 88

                   dlmgEQlsillrgspFtgrK<-*
                     ++E   + +  + F  r
  GI|1705556    89 QQEAE---VEEDIEAFILRH    105

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