In C:\Program Files\The All Seeing Eye\ open your filters.txt. Look for the following:
Quake 3: Arena\PunkBuster
Group: NUL
Quake 3: Arena\PunkBuster\On
Mutex: Q3PB
Group: Q3PB
1 if sv_punkbuster != "1" remove
Quake 3: Arena\PunkBuster\Off
Mutex: Q3PB
Group: Q3PB
Flags: OTHER
Add this below it:
Quake 3: Arena\BattlEye
Group: NUL
Quake 3: Arena\BattlEye\On
Mutex: Q3BE
Group: Q3BE
1 if sv_battleye != "1" remove
Quake 3: Arena\BattlEye\Off
Mutex: Q3BE
Group: Q3BE
Flags: OTHER
Also look for:
Quake 3: Arena\Urban Terror\v3.7
Group: Q3UTVER
Mutex: Q3UTVER
1 if g_modversion != "3.7" remove
And add this below it:
Quake 3: Arena\Urban Terror\v4.0
Group: Q3UTVER
Mutex: Q3UTVER
1 if g_modversion != "4.0" remove
You can right click a filter and select 'custom config' to let ioUrbanTerror.exe start instead of quake3.exe for the filter.