All pastes #417229 Raw Edit

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#417229 ·published 2007-03-30 19:10 UTC
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]$ rpmbuild -bp haploview.spec 
Exécution_de(%prep): /bin/sh -e /var/tmp/rpm-tmp.91636
+ umask 022
+ cd /home/builder/rpmbuild/BUILD
+ LANG=C
+ export LANG
+ unset DISPLAY
+ cd /home/builder/rpmbuild/BUILD
+ rm -rf haploview
+ /bin/gzip -dc /home/builder/rpmbuild/SOURCES/Haploview3.3.tar.gz
+ tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd haploview
++ /usr/bin/id -u
+ '[' 501 = 0 ']'
++ /usr/bin/id -u
+ '[' 501 = 0 ']'
+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ exit 0
[builder@localhost SPECS]$ rpmbuild -bc --short-circuit haploview.spec 
Exécution_de(%build): /bin/sh -e /var/tmp/rpm-tmp.58284
+ umask 022
+ cd /home/builder/rpmbuild/BUILD
+ cd haploview
+ LANG=C
+ export LANG
+ unset DISPLAY
+ ant haploview
Buildfile: build.xml

init:

prepare-compile:
    [mkdir] Created dir: /home/builder/rpmbuild/BUILD/haploview/build/classes

compile-haploview:
    [javac] Compiling 83 source files to /home/builder/rpmbuild/BUILD/haploview/build/classes
    [javac] ----------
    [javac] 1. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/BasicTableModel.java (at line 6)
    [javac]     public class BasicTableModel extends AbstractTableModel{
    [javac]                  ^^^^^^^^^^^^^^^
    [javac] The serializable class BasicTableModel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 2. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/CheckDataController.java
    [javac]  (at line 10)
    [javac]     public class CheckDataController extends JPanel implements ActionListener {
    [javac]                  ^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class CheckDataController does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 3. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/CheckDataPanel.java (at line 16)
    [javac]     public class CheckDataPanel extends JPanel
    [javac]                  ^^^^^^^^^^^^^^
    [javac] The serializable class CheckDataPanel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 4. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/CheckDataPanel.java
    [javac]  (at line 196)
    [javac]     class CheckDataTableModel extends AbstractTableModel {
    [javac]           ^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class CheckDataTableModel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 5. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/CheckDataPanel.java (at line 254)
    [javac]     class CheckDataCellRenderer extends DefaultTableCellRenderer {
    [javac]           ^^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class CheckDataCellRenderer does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 6. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/DPrimeDisplay.java
    [javac]  (at line 27)
    [javac]     public class DPrimeDisplay extends JComponent
    [javac]                  ^^^^^^^^^^^^^
    [javac] The serializable class DPrimeDisplay does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 7. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/ExportDialog.java (at line 9)
    [javac]     public class ExportDialog extends JDialog implements ActionListener, Constants{
    [javac]                  ^^^^^^^^^^^^
    [javac] The serializable class ExportDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 8. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/FilteredIndividualsDialog.
    [javac] java (at line 9)
    [javac]     import java.util.Arrays;
    [javac]            ^^^^^^^^^^^^^^^^
    [javac] The import java.util.Arrays is never used
    [javac] ----------
    [javac] 9. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/FilteredIndividualsDialog.
    [javac] java (at line 12)
    [javac]     public class FilteredIndividualsDialog extends JDialog implements ActionListener, Constants{
    [javac]                  ^^^^^^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class FilteredIndividualsDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 10. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/GBrowseDialog.java
    [javac]  (at line 9)
    [javac]     public class GBrowseDialog extends JDialog implements ActionListener, Constants{
    [javac]                  ^^^^^^^^^^^^^
    [javac] The serializable class GBrowseDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------

    [javac] 11. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/GBrowseOptionDialog.java (at line 8)
    [javac]     public class GBrowseOptionDialog extends JDialog implements ActionListener, Constants{
    [javac]                  ^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class GBrowseOptionDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 12. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/HaploData.java
    [javac]  (at line 1638)
    [javac]     boolean[] tags = finishedHaplos[i][0].getTags();
    [javac]               ^^^^
    [javac] The local variable tags is never read
    [javac] ----------
    [javac] ----------
    [javac] 13. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/HaploView.java
    [javac]  (at line 23)
    [javac]     public class HaploView extends JFrame implements ActionListener, Constants{
    [javac]                  ^^^^^^^^^
    [javac] The serializable class HaploView does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 14. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/HaploView.java (at line 1388)
    [javac]     class HaploviewTabbedPane extends JTabbedPane{
    [javac]           ^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class HaploviewTabbedPane does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 15. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/HaploViewException.java
    [javac]  (at line 3)
    [javac]     public class HaploViewException extends Exception {
    [javac]                  ^^^^^^^^^^^^^^^^^^
    [javac] The serializable class HaploViewException does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 16. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/HaplotypeDisplay.java (at line 10)
    [javac]     public class HaplotypeDisplay extends JComponent {
    [javac]                  ^^^^^^^^^^^^^^^^
    [javac] The serializable class HaplotypeDisplay does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 17. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/HaplotypeDisplayControlle
    [javac] r.java (at line 9)
    [javac]     public class HaplotypeDisplayController extends JPanel {
    [javac]                  ^^^^^^^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class HaplotypeDisplayController does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 18. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/HaploviewTab.java (at line 6)
    [javac]     public class HaploviewTab extends JPanel{
    [javac]                  ^^^^^^^^^^^^
    [javac] The serializable class HaploviewTab does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 19. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/IndividualDialog.java
    [javac]  (at line 28)
    [javac]     public class IndividualDialog extends JDialog implements ActionListener, Constants {
    [javac]                  ^^^^^^^^^^^^^^^^
    [javac] The serializable class IndividualDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------

    [javac] 20. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/IndividualDialog.java (at line 174)
    [javac]     class IndividualCellRenderer extends DefaultTableCellRenderer {
    [javac]           ^^^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class IndividualCellRenderer does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 21. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/MendelDialog.java
    [javac]  (at line 27)
    [javac]     public class MendelDialog extends JDialog implements ActionListener, Constants {
    [javac]                  ^^^^^^^^^^^^
    [javac] The serializable class MendelDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 22. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/NumberTextField.java (at line 11)
    [javac]     public class NumberTextField extends JTextField {
    [javac]                  ^^^^^^^^^^^^^^^
    [javac] The serializable class NumberTextField does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 23. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/NumberTextField.java
    [javac]  (at line 27)
    [javac]     protected class NTFDocument extends PlainDocument {
    [javac]                     ^^^^^^^^^^^
    [javac] The serializable class NTFDocument does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 24. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/ProportionalSpacingDialog.java (at line 11)
    [javac]     public class ProportionalSpacingDialog extends JDialog implements ActionListener,
    [javac]                  ^^^^^^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class ProportionalSpacingDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 25. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/ReadDataDialog.java
    [javac]  (at line 12)
    [javac]     public class ReadDataDialog extends JDialog
    [javac]                  ^^^^^^^^^^^^^^
    [javac] The serializable class ReadDataDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 26. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/SwingWorker.java (at line 19)
    [javac]     private Thread thread;
    [javac]                    ^^^^^^
    [javac] The field SwingWorker.thread is never read locally
    [javac] ----------
    [javac] ----------
    [javac] 27. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TableSorter.java (at line 64)
    [javac]     public class TableSorter extends AbstractTableModel {
    [javac]                  ^^^^^^^^^^^
    [javac] The serializable class TableSorter does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 28. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TreeTable/AbstractCellEdi
    [javac] tor.java (at line 43)
    [javac]     import java.awt.Component;
    [javac]            ^^^^^^^^^^^^^^^^^^
    [javac] The import java.awt.Component is never used
    [javac] ----------
    [javac] 29. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TreeTable/AbstractCellEdi
    [javac] tor.java (at line 44)
    [javac]     import java.awt.event.*;
    [javac]            ^^^^^^^^^^^^^^
    [javac] The import java.awt.event is never used
    [javac] ----------
    [javac] 30. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TreeTable/AbstractCellEdi
    [javac] tor.java (at line 45)
    [javac]     import java.awt.AWTEvent;
    [javac]            ^^^^^^^^^^^^^^^^^
    [javac] The import java.awt.AWTEvent is never used
    [javac] ----------
    [javac] 31. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TreeTable/AbstractCellEdi
    [javac] tor.java (at line 49)
    [javac]     import java.io.Serializable;
    [javac]            ^^^^^^^^^^^^^^^^^^^^
    [javac] The import java.io.Serializable is never used
    [javac] ----------
    [javac] ----------
    [javac] 32. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TreeTable/JTreeTable.java
    [javac]  (at line 61)
    [javac]     public class JTreeTable extends JTable {
    [javac]                  ^^^^^^^^^^
    [javac] The serializable class JTreeTable does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 33. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TreeTable/JTreeTable.java (at line 74)
    [javac]     tree.setSelectionModel(new DefaultTreeSelectionModel() {
    [javac]                                ^^^^^^^^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class  does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 34. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TreeTable/JTreeTable.java
    [javac]  (at line 107)
    [javac]     public class TreeTableCellRenderer extends JTree implements TableCellRenderer {
    [javac]                  ^^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class TreeTableCellRenderer does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 35. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TreeTable/TreeTableModelAdapter.java (at line 62)
    [javac]     public class TreeTableModelAdapter extends AbstractTableModel
    [javac]                  ^^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class TreeTableModelAdapter does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 36. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/TweakBlockDefsDialog.java
    [javac]  (at line 9)
    [javac]     public class TweakBlockDefsDialog extends JDialog implements ActionListener {
    [javac]                  ^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class TweakBlockDefsDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------

    [javac] ----------
    [javac] 37. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/UpdateDisplayDialog.java (at line 10)
    [javac]     public class UpdateDisplayDialog extends JDialog implements ActionListener, Constants{
    [javac]                  ^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class UpdateDisplayDialog does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 38. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/association/CustomAssocPa
    [javac] nel.java (at line 10)
    [javac]     public class CustomAssocPanel extends HaploviewTab implements Constants {
    [javac]                  ^^^^^^^^^^^^^^^^
    [javac] The serializable class CustomAssocPanel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 39. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/association/HaploAssocPanel.java (at line 17)
    [javac]     public class HaploAssocPanel extends HaploviewTab implements Constants,ActionL
    [javac] istener {
    [javac]                  ^^^^^^^^^^^^^^^
    [javac] The serializable class HaploAssocPanel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 40. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/association/PermutationTestPanel.java (at line 21)
    [javac]     public class PermutationTestPanel extends HaploviewTab
    [javac]                  ^^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class PermutationTestPanel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 41. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/association/TDTPanel.java
    [javac]  (at line 13)
    [javac]     public class TDTPanel extends HaploviewTab
    [javac]                  ^^^^^^^^
    [javac] The serializable class TDTPanel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 42. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/tagger/TaggerConfigPanel.java (at line 22)
    [javac]     public class TaggerConfigPanel extends HaploviewTab
    [javac]                  ^^^^^^^^^^^^^^^^^
    [javac] The serializable class TaggerConfigPanel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 43. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/tagger/TaggerConfigPanel.
    [javac] java (at line 357)
    [javac]     class TagConfigTableModel extends AbstractTableModel {
    [javac]           ^^^^^^^^^^^^^^^^^^^
    [javac] The serializable class TagConfigTableModel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 44. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/tagger/TaggerResultsPanel.java (at line 17)
    [javac]     public class TaggerResultsPanel extends HaploviewTab
    [javac]                  ^^^^^^^^^^^^^^^^^^
    [javac] The serializable class TaggerResultsPanel does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 45. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/tagger/TaggerResultsPanel
    [javac] .java (at line 203)
    [javac]     class GreyedOutRenderer extends DefaultTableCellRenderer {
    [javac]           ^^^^^^^^^^^^^^^^^
    [javac] The serializable class GreyedOutRenderer does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 46. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/haploview/tagger/TaggerResultsPanel.java (at line 223)
    [javac]     class TagListRenderer extends DefaultListCellRenderer{
    [javac]           ^^^^^^^^^^^^^^^
    [javac] The serializable class TagListRenderer does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 47. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/pedfile/CheckDataException.java
    [javac]  (at line 22)
    [javac]     public class CheckDataException extends Exception{
    [javac]                  ^^^^^^^^^^^^^^^^^^
    [javac] The serializable class CheckDataException does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 48. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/pedfile/PedFileException.java (at line 3)
    [javac]     public class PedFileException extends Exception{
    [javac]                  ^^^^^^^^^^^^^^^^
    [javac] The serializable class PedFileException does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 49. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/pedparser/PedigreeException.java
    [javac]  (at line 3)
    [javac]     public class PedigreeException extends Exception{
    [javac]                  ^^^^^^^^^^^^^^^^^
    [javac] The serializable class PedigreeException does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] ----------
    [javac] 50. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/tagger/LocusCorrelation.java (at line 3)
    [javac]     import java.util.Hashtable;
    [javac]            ^^^^^^^^^^^^^^^^^^^
    [javac] The import java.util.Hashtable is never used
    [javac] ----------
    [javac] ----------
    [javac] 51. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/tagger/SNP.java (at line 3)
    [javac]     import java.util.Vector;
    [javac]            ^^^^^^^^^^^^^^^^
    [javac] The import java.util.Vector is never used
    [javac] ----------
    [javac] 52. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/tagger/SNP.java (at line 4)
    [javac]     import java.util.Comparator;
    [javac]            ^^^^^^^^^^^^^^^^^^^^
    [javac] The import java.util.Comparator is never used
    [javac] ----------
    [javac] ----------
    [javac] 53. WARNING in /home/builder/rpmbuild/BUILD/haploview/edu/mit/wi/tagger/TaggerException.java (at line 3)
    [javac]     public class TaggerException extends Exception{
    [javac]                  ^^^^^^^^^^^^^^^
    [javac] The serializable class TaggerException does not declare a static final serialVersionUID field of type long
    [javac] ----------
    [javac] 53 problems (53 warnings)
     [copy] Copying 1 file to /home/builder/rpmbuild/BUILD/haploview/build/classes/edu/mit/wi/haploview

haploview:
      [jar] Building jar: /home/builder/rpmbuild/BUILD/haploview/Haploview.jar

BUILD SUCCESSFUL
Total time: 6 seconds
+ exit 0


$ rpmbuild -bi --short-circuit haploview.spec 
Exécution_de(%install): /bin/sh -e /var/tmp/rpm-tmp.64114
+ umask 022
+ cd /home/builder/rpmbuild/BUILD
+ cd haploview
+ LANG=C
+ export LANG
+ unset DISPLAY
+ rm -rf /var/tmp/haploview-3.3-1.fc6-root-builder
+ install -d /var/tmp/haploview-3.3-1.fc6-root-builder/usr/bin
+ install -m 755 bin/haploview /var/tmp/haploview-3.3-1.fc6-root-builder/usr/bin/haploview
install: cannot stat `bin/haploview': No such file or directory
erreur: Mauvais status de sortie pour /var/tmp/rpm-tmp.64114 (%install)


Erreur de construction de RPM:
    Mauvais status de sortie pour /var/tmp/rpm-tmp.64114 (%install)