All pastes #2134157 Raw Edit

4-core hang

public text v1 · immutable
#2134157 ·published 2012-03-30 21:13 UTC
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----- GAMESS execution script 'rungms' -----
This job is running on host Mac-Pro.local
under operating system Darwin at Fri Mar 30 16:09:18 CDT 2012
Available scratch disk space (Kbyte units) at beginning of the job is
Filesystem 1024-blocks      Used Available Capacity  Mounted on
/dev/disk2   145372476 142716908   2399568    99%    /
Copying input file data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.inp to your run's scratch directory...
cp data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.inp .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F05
unset echo
setenv AUXDATA .//auxdata
setenv EXTBAS /dev/null
setenv NUCBAS /dev/null
setenv POSBAS /dev/null
setenv ERICFMT .//auxdata/ericfmt.dat
setenv MCPPATH .//auxdata/MCP
setenv BASPATH .//auxdata/BASES
setenv QUANPOL .//auxdata/QUANPOL
setenv MAKEFP .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.efp
setenv GAMMA .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.gamma
setenv TRAJECT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.trj
setenv RESTART .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.rst
setenv INPUT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F05
setenv PUNCH .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.dat
setenv AOINTS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F08
setenv MOINTS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F09
setenv DICTNRY .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F10
setenv DRTFILE .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F11
setenv CIVECTR .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F12
setenv CASINTS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F13
setenv CIINTS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F14
setenv WORK15 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F15
setenv WORK16 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F16
setenv CSFSAVE .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F17
setenv FOCKDER .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F18
setenv WORK19 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F19
setenv DASORT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F20
setenv DFTINTS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F21
setenv DFTGRID .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F22
setenv JKFILE .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F23
setenv ORDINT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F24
setenv EFPIND .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F25
setenv PCMDATA .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F26
setenv PCMINTS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F27
setenv SVPWRK1 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F26
setenv SVPWRK2 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F27
setenv COSCAV .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F26
setenv COSDATA ~jayson/scr/data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.cosmo
setenv COSPOT ~jayson/scr/data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.pot
setenv MLTPL .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F28
setenv MLTPLT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F29
setenv DAFL30 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F30
setenv SOINTX .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F31
setenv SOINTY .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F32
setenv SOINTZ .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F33
setenv SORESC .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F34
setenv GCILIST .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F37
setenv HESSIAN .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F38
setenv QMMMTEI .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F39
setenv SOCCDAT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F40
setenv AABB41 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F41
setenv BBAA42 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F42
setenv BBBB43 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F43
setenv MCQD50 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F50
setenv MCQD51 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F51
setenv MCQD52 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F52
setenv MCQD53 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F53
setenv MCQD54 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F54
setenv MCQD55 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F55
setenv MCQD56 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F56
setenv MCQD57 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F57
setenv MCQD58 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F58
setenv MCQD59 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F59
setenv MCQD60 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F60
setenv MCQD61 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F61
setenv MCQD62 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F62
setenv MCQD63 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F63
setenv MCQD64 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F64
setenv NMRINT1 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F61
setenv NMRINT2 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F62
setenv NMRINT3 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F63
setenv NMRINT4 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F64
setenv NMRINT5 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F65
setenv NMRINT6 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F66
setenv DCPHFH2 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F67
setenv DCPHF21 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F68
setenv ELNUINT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F67
setenv NUNUINT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F68
setenv GVVPT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F69
setenv NUMOIN .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F69
setenv NUMOCAS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F70
setenv NUELMO .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F71
setenv NUELCAS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F72
setenv RIVMAT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F51
setenv RIT2A .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F52
setenv RIT3A .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F53
setenv RIT2B .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F54
setenv RIT3B .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F55
setenv GMCREF .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F70
setenv GMCO2R .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F71
setenv GMCROC .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F72
setenv GMCOOC .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F73
setenv GMCCC0 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F74
setenv GMCHMA .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F75
setenv GMCEI1 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F76
setenv GMCEI2 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F77
setenv GMCEOB .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F78
setenv GMCEDT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F79
setenv GMCERF .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F80
setenv GMCHCR .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F81
setenv GMCGJK .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F82
setenv GMCGAI .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F83
setenv GMCGEO .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F84
setenv GMCTE1 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F85
setenv GMCTE2 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F86
setenv GMCHEF .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F87
setenv GMCMOL .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F88
setenv GMCMOS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F89
setenv GMCWGT .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F90
setenv GMCRM2 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F91
setenv GMCRM1 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F92
setenv GMCR00 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F93
setenv GMCRP1 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F94
setenv GMCRP2 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F95
setenv GMCVEF .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F96
setenv GMCDIN .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F97
setenv GMC2SZ .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F98
setenv GMCCCS .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F99
unset echo
.//ddikick.x .//gamess.Aug112011R1.x data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G -ddi 4 4 localhost localhost localhost localhost -scr ./

 Distributed Data Interface kickoff program.
 Initiating 4 compute processes on 4 nodes to run the following command:
 .//gamess.Aug112011R1.x data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G 

 DDI Process 2: error code 911
 DDI Process 2: TCP Error in Recv.
 TCP recv error: Unknown.
 TCP recv error: return value errno=0
 DDI Process 1: error code 911
 DDI Process 1: TCP Error in Recv.
 TCP recv error: Unknown.
 TCP recv error: return value errno=0
 DDI Process 6: error code 911
 DDI Process 6: TCP Error in Recv.
 TCP recv error: Unknown.
 TCP recv error: return value errno=0
 ddikick.x: Timed out while waiting for DDI processes to check in.
 ddikick.x: Fatal error detected.
 The error is most likely to be in the application, so check for
 input errors, disk space, memory needs, application bugs, etc.
 ddikick.x will now clean up all processes, and exit...
 DDI Process 0: terminated upon request.
 DDI Process 3: terminated upon request.
 DDI Process 4: terminated upon request.
 DDI Process 5: terminated upon request.
 DDI Process 7: terminated upon request.
 ddikick.x: Sending kill signal to DDI processes.
 ddikick.x: Execution terminated due to error(s).
unset echo
----- accounting info -----
Files used on the master node Mac-Pro.local were:
-rw-r--r--  1 jayson  staff     1112 Mar 30 16:09 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F05
-rw-r--r--  1 jayson  staff  1537840 Mar 30 16:08 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F10
-rw-r--r--  1 jayson  staff   786432 Mar 30 16:08 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.F20
-rw-r--r--  1 jayson  staff     1112 Mar 30 15:57 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.inp
-rw-r--r--  1 jayson  staff    10883 Mar 30 16:11 .//data/queue/napthoquinone_DFT_321G/napthoquinone_DFT_321G.log
Fri Mar 30 16:11:19 CDT 2012
0.069u 0.061s 2:01.18 0.0%	0+0k 2+9io 0pf+0w