rendered paste bodyTAXEQ3 : Safe Taxonomic Reduction for brad.dat 23/3/2012 21:42
48 Taxa and 233 characters
Terminal Taxa
1 = Megapnosaurus_kayentakae
2 = Sigilmassasaurus_brevicollis
3 = Concavenator_corcovatus
4 = Aerosteon_ricocoloradensis
5 = Australovenator_wintonensis
6 = Chilantaisaurus_tashuikouensis
7 = Fukuiraptor_kitadanensis
8 = Megaraptor_namunhuaiquii
9 = Neovenator_salerii
10 = Orkoraptor_burkei
11 = Shaochilong_maortuensis
12 = Allosaurus_fragilis
13 = Eocarcharia_dinops
14 = Acrocanthosaurus_atokensis
15 = Carcharodontosaurus
16 = Giganotosaurus_carolinii
17 = Mapusaurus_roseae
18 = Tyrannotitan_chubutensis
19 = ABELISAURIDAE
20 = Afrovenator_abakensis
21 = Baryonyx_walkeri
22 = Ceratosaurus_nasicornis
23 = Compsognathus_longipes
24 = Condorraptor_currumili
25 = Dilophosaurus_wetherilli
26 = Dubreuillosaurus_valesdunensis
27 = Eustreptospondylus_oxoniensis
28 = Guanlong_wucaii
29 = Irritator_challengeri
30 = Lourinhanosaurus_antunesi
31 = Magnosaurus_nethercombensis
32 = Marshosaurus_bicentissimus
33 = Megalosaurus_bucklandii
34 = Duriavenator_hesperis
35 = Metriacanthosaurus_parkeri
36 = Monolophosaurus_jiangi
37 = Piatnitzkysaurus_floresi
38 = Poekilopleuron_bucklandii
39 = Sinraptor_dongi
40 = Spinosaurus_aegyptiacus
41 = Streptospondylus_altdorfensis
42 = Suchomimus_tenerensis
43 = Tanycolagreus_topwilsoni
44 = Torvosaurus_tanneri
45 = Xuanhanosaurus_qilixianensis
46 = Chuandongocoelurus_primitivus
47 = Piveteausaurus_divesensis
48 = Kelmayisaurus
All multistate characters are treated as unordered
Original Matrix
1. 20?101100111100?0??0????000200?01021200?10?0000?1011100??0010002000000000??
010?1??1?010???000?00?100?0?11001000001???0?00???00?10???????0??010110?0???
???0?00001?0?00001?01010?011?0??000000100001?01101000000132?00??000???00?0?
00000000
2. ???????????????????????????????????????????????????????????????????????????
???????????????????????????????10111010????????????????????????????????????
???????????????????????????????????????????????????????????????????????????
???0????
3. ????????10?1????1??????????111010110210?100111??02?????????0???????????????
?0??????????01?020?21?1????????10????1000??0001?00??001010010210??0000?1?00
00???????0101?1??10101?????01???1?112011?0?????????11??0??3?01??0?0?000???0
?000????
4. ???????????????????????????????????????????0000000???10?00?????????????????
????????????01?0?0?10??????????102120101011000001???21???????10012?????????
??????????10121201010122101?????????????????????010101210?120??1111??0?????
11?0??0?
5. ????????????????????100?????0??????????????????????????????????????????????
?000000?????01?0?0?00???????????????????????????????????????????????????100
00?011???0??????????????????????????2012101111000101012102120?1???1?001?111
?10???11
6. ???????????????????????????????????????????????????????????????????????????
??????????????????????????????????????????????????????????????????011001???
????????10??1212???1????????????????2????11??1000??101?1??1??11???????0?1??
??0????1
7. ????????????????????1000????0??????????????????????????????????????????????
?????????0??0010?00?0???????????0????1??????????????????????????120010??100
????????0?????1????1????????????????101210111100010101??????011??0???0101?1
?10???1?
8. ???????????????????????????????????????????????????????????????????????????
????????????????????????????????0212?1?1??1??????????1???1???11?12???????00
0010111000??????????012?????????????????????????????????????????11??1?1?1?1
????????
9. 10??0000100110210100100110011101????????????????????????????0??????????????
10010002?0100100?0010????111001102120111010000001?0?2010110101??12?????????
?????????0??12120101012210101011?11120?110111100010101230111?1110010?000?1?
??0000?1
10. ???????????????????????????????????????????0000000???????0?????????????????
????????????01?0?00?0??????????????????1?????????????1?????????????????????
????????????????????????????????????????????????01010???????????1????1?????
1???????
11. ??????000000210101001000????0??1?????????????????????00?00????10100110110??
??????????????????????????100?110??????????????????????????????????????????
???????????????????????????????????????????????????????????????????????1???
????????
12. ?011100010011021?10010000001010110?0131100101000001100010?00000101000111000
1010001210100110200101111010001101110100000000001000001011?1021012100011100
001001110011111201010121101001110100101110111000010101000111011000000000000
00000001
13. ???????0001111212??01000???????????????????11000?1?????????????????????????
??????????1?01?????10??????????????????????????????????????????????????????
???????????????????????????????????????????????????????????????????1?0?0???
????????
14. 10101?000001112121001000100000?02111121?00111120021111000100000000011011000
12011001001001?020?1001101100?10021201?1?10120001?1?0010?1?1021012110011001
1111010100?11?????????221010101?0110201110111000010101130212011000?10001000
?000??01
15. ?????0?0000021010100100010001111?11??21??0?11120??????????0011101??1??11011
?????0????0?0010?0021?????????0?0??1?1??1?0??????????1?????????????????????
????????????????????????????????????2??1201111?0??????????3????????1?0?1???
??0?????
16. 00????00?000?10101?0100010002111??1?12110011112002???10?00?011101??10?11011
?2101001?0000010?0021?1??11000000212010101012000?0??20?0?10?0???1??????????
?????????0??1112010101221010101?01102011?01???0?010101230212???0???????1???
??0000?1
17. ???????0000021010100100010002111?1????1100111120?2???10?0000???????????????
?2101?0???000010?002101?????????02?2?1?1?1012000??1?20?0?1???21???11?011???
???1?????0?????????1???????01?1101?02??1101?1?0001010123021?0110???????10??
?000??01
18. ????????????????????1?0??????????1?????????????????????????????????????????
?2?01?0?????0??0?0020???????????0212?1?1?1012000??0???????????1?1??????????
?????????0??????????0?2???????11????20?11011100??????1???2?????00????0?????
??00???1
19. 001?000000002000?1001010??0010??2011000??0110020020110100010001?0000?00101?
0010000110?0001010000010001?00010210000?01000100010000?21100110100111010000
00?0100000?0100001000020?0100001001101100001101011100120??32000000000000000
00011100
20. ???????0101110?1?1000000?????????01112100000001110?0101?1?000??????????????
??????????0?011020000????00011100?11?1?010?0?000???????011100??????1?0?????
??1001??00?110111?0?0?20??1101?10110110100100000??00?1101001?1?00?010000000
?000???0
21. 21010?1121???????1110100?11?0????0011310010??????????00?0??????000100?111?0
?1010113?12100?1?1100011??11101101110100101020110???00???01?01??10?11100011
00??????1?????11?1010??????0?00100??111???100001?????????01????0?0?010?0000
???0???0
22. 001110000001201010001000111000?01011131000000000100110110100000100000001010
000000100010001010000000001?0000020000100000210001??10020100110101011000???
??001000?1??100001?01010?010?001001101100001101011100110033000000?00?0?0?00
00011100
23. 10???100000?002?0??000??000000?00010100?0??000?200?????0?0?10?0????????????
?0?00??1?01001?02000010?0?1?????1?110100???000?000???00001?011111?01????100
0??00?0100?00?13????01?101?1??100?1????1?1??????0????1??????1???0??0?100???
01?0????
24. ???????????????????????????????????????????????????????????????????????????
????????????0100?0010??????????0011110?01010?000100?10?2?11????????????????
?????????0?1?0110??100?????0???100???????010100001000??????????00????00??0?
???000??
25. 201?0010011110000000?10????20100201?100?101000?0101110000010??02000010001?0
01010011?101000010000?1?000?11000?00000000001000000?00020100000101001000100
100010000110000001100000?00?0001??11011000000000000000000?20000000000000000
00000000
26. 1?????001011201001000000?????????011????00??0?111000????????00?0001011010?0
?101111100000110200001??????????01?1???0??????0?0???00?0?1??1?0????????????
???????????????????????????????????????1??0?0?0??????1??000????????1?0?00??
????????
27. 2?????001100??11?1000000??????????11011000000011?000101?0??00??0001010010?0
?1011111?0000?00?0000?????1?1111011101?000101000000?00?0?????1????012000???
???????????0?010110?0?20?0?101?001??111100100000000?0100000?01000?00?000?0?
?0000000
28. 0??00?001001102?0????????10000?02110102?00?000??00100??2??010?0????????????
?0?01??110000??020??0?01??????????1?00?????00???0????0?1?????2????000???100
0?1011010??21213??0?00?10??0?10?0?1????21????0??0???????0???1?1?0?0?0000000
01100001
29. ??????????0??02?0?11????11?000?01001130?010??0???0??0??2?000?00000100011100
????????????1?0121101?110??????????????????????????????????????????????????
???????????????????????????????????????????????????????????????????????0???
????????
30. ???????????????????????????????????????????????????????????????????????????
????????????????????????????????01?1??000??0?000?0?10010?1??1??????????????
?????????0??1111?001?0???????01100??10111010??0?000?0110011????00?0????????
?00000?1
31. ????????????????????00?????????????????????????????????????????????????????
?1011?1?????0?00?0000???????????0??????0?????0?????????????????????????????
??????????????????????????????????????????10000?000??110?????????????????0?
?0??????
32. 00???0000001001100000000???00????0??????????0??1100010000?0?00000000?11100?
???????1000?0??0?0??0????10011110111110000101000?????????????1?????0?0?????
?????????0?????1???????????????????????????????????????????????00?01?0?0???
0??0????
33. ???????00001??11?1000011?????????1?????????????????????????????????????????
?000011???000110?0010?0?0???????01?1?1?01010200000010010?????00?00?121??000
?????????001101110010??0?00101?1111011010010000001001100?????10000010001?00
?00000?0
34. 10???10010?1?01101000000???????????????????????????????????????????????????
?001111?00000100?0000??????????????????????????????????????????????????????
???????????????????????????????????????????????????????????????????0???0???
????????
35. ???????????????????????????????????????????????????????????????????????????
????????????????????????????????0??1???0?00020001???00?0???????????????????
?????????0????110?01??2???10?????0??1??1?0???0000?001??????????00?0????????
??00???1
36. 00111?0010001???0??000??1100110121111?0?0000000?111?1001?01000000000?01100?
?1000?11?0010??020?101010?1???11011101?010?010000???00?????????????????????
?????????00110110?1010?????00?0100?0???????????????????????????00?0??0?0???
0??000??
37. ???????00?010?11?1000010????????????????????????????????????0???00001011000
?010?01???1?0110?0010????0001111011??0?010101000?00?10???????10?120010101?0
??1??????0?1?0110?010020?000001100101?1100100000010011000111?10000000000?00
?0000000
38. ???????????????????????????????????????????????????????????????????????????
???????????????????????????????????????????????????????011?11??????1?011000
01?001???????????????????????????????????????????????110?1??0?????????????0
?0??????
39. 0010100000010121100000?0000001012110221100101000010110010000010111000111000
10001?1110100?1020010010111011010111011010102000100?001211?1?1100??????????
???0??10?011101100010020?0100011101110111011100000001100011001100000?00000?
00000001
40. 21101?112100000????1?1?????????????????????????????????????????????????????
?1010??3?1??1?0121101??????????10????1??????2?000??????????????????????????
???????????????????????????????????????????????????????????????????????0???
???0????
41. ???????????????????????????????????????????????????????????????????????????
????????????????????????????????0??1?1?00????000???????????????????????????
??????????????????????20?00???????????????????00?????110????0??0???????????
?0?0??0?
42. 21010?112101200?0?110100????????????????????0??????????????????????????????
?10????3?121000121100?????1??0?00111?1?0101020110????0?0?010010?10011100011
00??????1001101??1?10??????0??11??1?1?11101000010?010101101????0000010?0000
??00??00
43. 0?????00?????????????????0??00?0??2?202?000?0?1201???00?0?0????????????????
???????110??0??0?00?00????1011110??1?0?0?00000000????0?111??120?1101010?1?0
101011110?????????????21011?????????1?11110110000101010201121110?0??0?10100
?110??01
44. 101?00001000201001001001?????????011011001000011?0??101?1000???????????????
?0010??1?0000110?0010????0110010011101?11010100000??0110?110000000?12000000
00?0110?10?0101110010020?001010001001?0100100000000101200002010000010001000
0000??0?
45. ???????????????????????????????????????????????????????????????????????????
????????????????????????????????0??????010?0??000????????????????2?1??10100
0010?1000??????????????????????????????????????????????????1?????0??0???0?0
???0????
46. ???????????????????????????????????????????????????????????????????????????
????????????????????????????????0??????0???????????????????????????????????
?????????0???0110?10?0??????????????0?1100001000000??101122?01????0???0??0?
??0???00
47. ????????????????????????????????????????????????????????????000?0010100110?
???????????????????????????????????????????????????????????????????????????
???????????????????????????????????????????????????????????????????????????
????????
48. ????????10???????1??10?0???????????????????????????????????????????????????
?000101?????0??0????0??????????????????????????????????????????????????????
???????????????????????????????????????????????????????????????????1?0?1???
????????
--------------------------------------------------------------------------------
Type:UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU
Type:UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU
Type:UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU
Type:UUUUUUUU
Dispersion of Missing entries across Characters
10 1 character
11 1 character
12 2 characters
13 1 character
16 3 characters
17 2 characters
18 1 character
19 7 characters
20 10 characters
21 6 characters
22 8 characters
23 6 characters
24 17 characters
25 12 characters
26 10 characters
27 12 characters
28 13 characters
29 15 characters
30 20 characters
31 15 characters
32 19 characters
33 12 characters
34 5 characters
35 7 characters
36 10 characters
37 7 characters
38 5 characters
39 2 characters
40 3 characters
44 1 character
6557 missing entries (58.628%)
Averages
136.604 per taxon
28.142 per character
Uninformative between-taxon pairwise comparisons = 18345 (2697.794%)
==============================================================
Taxonomic Equivalence and Scope for Safe Taxonomic Reduction
==============================================================
Index ? % (n) : Equivalents
--------------------------------------------------------------
1 29.18% (68) : None
2 96.14% (224) : 3D 5D 6D 7D 10D 11D 12E 13D 15D 21E 26D
27D 29D 30D 31D 33D 34D 35D 36D 38D 40D 41D 45D
46D 47D 48D
3 56.22% (131) : 2D 47D
4 65.67% (153) : 6D 47D 48D
5 73.39% (171) : 2D 11D 47D
6 86.70% (202) : 2D 4D 10D 11D 13D 29D 34D 40D 47D 48D
7 75.54% (176) : 2D 47D
8 85.41% (199) : 10D 11D 13D 29D 34D 40D 47D 48D
9 35.62% (83) : 47D
10 89.70% (209) : 2D 6D 8D 11D 34D 38D 47D
11 81.97% (191) : 2D 5D 6D 8D 10D 18D 30D 35D 38D 41D 45D
46D
12 2.15% (5) : 2C
13 87.55% (204) : 2D 6D 8D 24D 30D 35D 38D 41D 45D 46D 47D
14 11.59% (27) : None
15 65.67% (153) : 2D 38D 45D
16 32.62% (76) : 17D
17 46.78% (109) : 16D 47D
18 77.68% (181) : 11D 47D
19 8.58% (20) : None
20 40.77% (95) : 45D 47D
21 40.77% (95) : 2C
22 8.15% (19) : None
23 47.21% (110) : 47D
24 72.53% (169) : 13D 47D 48D
25 9.87% (23) : None
26 61.80% (144) : 2D 41D 45D
27 32.62% (76) : 2D
28 49.36% (115) : 47D
29 76.39% (178) : 2D 6D 8D 30D 35D 38D 41D 45D 46D
30 74.25% (173) : 2D 11D 13D 29D 31D 32D 34D 38D 40D 41D 47D
48D
31 87.12% (203) : 2D 30D 32D 35D 38D 41D 45D 47D
32 60.09% (140) : 30D 31D 41D 46D
33 45.92% (107) : 2D 47D
34 83.26% (194) : 2D 6D 8D 10D 30D 35D 38D 41D 45D 46D 47D
35 82.83% (193) : 2D 11D 13D 29D 31D 34D 38D 47D 48D
36 45.49% (106) : 2D 38D 45D 46D
37 38.63% (90) : None
38 89.70% (209) : 2D 10D 11D 13D 15D 29D 30D 31D 34D 35D 36D
40D 41D 47D 48D
39 10.73% (25) : None
40 83.26% (194) : 2D 6D 8D 30D 38D 41D 45D 46D 47D
41 90.56% (211) : 2D 11D 13D 26D 29D 30D 31D 32D 34D 38D 40D
47D 48D
42 45.92% (107) : 47D
43 48.93% (114) : 47D
44 21.89% (51) : 47D
45 87.55% (204) : 2D 11D 13D 15D 20D 26D 29D 31D 34D 36D 40D
46D 47D 48D
46 83.69% (195) : 2D 11D 13D 29D 32D 34D 36D 40D 45D 47D 48D
47 94.42% (220) : 2D 3D 4D 5D 6D 7D 8D 9D 10D 13D 17D
18D 20D 23D 24D 28D 30D 31D 33D 34D 35D 38D 40D
41D 42D 43D 44D 45D 46D 48D
48 92.27% (215) : 2D 4D 6D 8D 24D 30D 35D 38D 41D 45D 46D
47D
==============================================================
Recoded T22 C83 -> ?
Recoded T1 C92 -> ?
Recoded T1 C109 -> ?
Recoded T28 C162 -> ?
Recoded T25 C173 -> ?
Recoded T15 C191 -> ?
Recoded T43 C206 -> ?
No additional Uninformative data found in TAXEQ analysis
KEY to Taxonomic Equivalence
A - Actual equivalents (symmetric)
can be safely deleted if Index is retained
B - Potential equivalents (symmetric)
can be safely deleted if Index is retained
C - Potential equivalents (asymmetric all one way)
can be safely deleted if Index is retained
D - Potential equivalents (asymmetric both ways)
cannot be safely deleted
E - Potential equivalents (asymmetric all one way)
Index can be safely deleted if equivalent is retained
* - Taxon must originate from same node as Index taxon in
any MPT (assuming no arbitrary resolutions)
! - Taxon has no informative data
*** Distribution of Missing Entries in Original Data ***
Matrix Concentration = 194.4090 (p = 0.001, expected = 163.5629)
Taxon Concentration = 165.9735 (p = 0.001, expected = 136.0093)
Character Concentration = 28.4356 (p = 0.001, expected = 27.5536)