# make plugins
cat: /etc/lsb-release: No such file or directory
mkdir -p obj/qubx_single_molecule/
qubx_single_molecule/qubx_idealize.cpp:581:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:588:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:593:0: warning: ignoring #pragma omp for [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:597:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:610:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:618:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:627:0: warning: ignoring #pragma omp for [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1032:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1034:0: warning: ignoring #pragma omp for [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1046:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1052:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1059:0: warning: ignoring #pragma omp for [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1062:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1072:0: warning: ignoring #pragma omp for [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1076:0: warning: ignoring #pragma omp for [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1080:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp:1092:0: warning: ignoring #pragma omp single [-Wunknown-pragmas]
qubx_single_molecule/qubx_idealize.cpp: In function void mplex_idl(int, int*, int**, float**, double**, int*, int*, float*, stimmap&):
qubx_single_molecule/qubx_idealize.cpp:134:9: warning: variable changing set but not used [-Wunused-but-set-variable]
qubx_single_molecule/qubx_idealize.cpp: In function int qubx_idlz_halfamp(qubx_model*, void*, qubx_stim_amps*):
qubx_single_molecule/qubx_idealize.cpp:600:53: warning: conversion to int from double may alter its value [-Wconversion]
qubx_single_molecule/qubx_idealize.cpp:620:51: warning: conversion to int from double may alter its value [-Wconversion]
qubx_single_molecule/qubx_idealize.cpp: In function int qubx_idlz_skm(qubx_model*, void*, qubx_stim_amps*, qubx_stim_rates*, double, int, int, int, int, double):
qubx_single_molecule/qubx_idealize.cpp:1149:55: warning: conversion to int from double may alter its value [-Wconversion]
mkdir -p obj/qubx_single_molecule/
qubx_single_molecule/max_subi_ll.cpp: In function void msl_multiplex_bounds(int, int, int**, int***, float***, double***, int*, int*, int*):
qubx_single_molecule/max_subi_ll.cpp:89:28: warning: conversion to std::vector<int>::value_type from std::set<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_subi_ll.cpp: At global scope:
qubx_single_molecule/max_subi_ll.cpp:69:17: warning: unused parameter durationseses [-Wunused-parameter]
qubx_single_molecule/max_subi_ll.cpp:69:17: warning: unused parameter ampseses [-Wunused-parameter]
qubx_single_molecule/max_subi_ll.cpp: In function void msl_multiplex_segment(int, int*, int**, float**, double**, int*, int*, float*, plexmap&, stimmap&):
qubx_single_molecule/max_subi_ll.cpp:163:28: warning: conversion to int from std::map<std::vector<double>, int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_subi_ll.cpp:171:28: warning: conversion to int from std::map<std::pair<int, int>, int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_subi_ll.cpp:152:9: warning: variable changing set but not used [-Wunused-but-set-variable]
qubx_single_molecule/max_subi_ll.cpp: In function void msl_multiplex(int, int, int**, int***, float***, double***, double, int*, int**, float**, int*, int*, int*, double*):
qubx_single_molecule/max_subi_ll.cpp:219:32: warning: conversion to int from std::map<std::pair<int, int>, int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_subi_ll.cpp: In function int subi_ll(int, int*, double*, double**, double**, int**, int**, double, int, int*, int**, float**, int, int, int*, int, double*, double*, eigen_func, double*, callbk_reportfun, void*, int*):
qubx_single_molecule/max_subi_ll.cpp:365:33: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_subi_ll.cpp:401:31: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_subi_ll.cpp:458:33: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_subi_ll.cpp:519:28: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
In file included from qubx_single_molecule/../qubfast/max_ll_util.h:22:0,
from qubx_single_molecule/max_subi_ll.cpp:57:
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_from_arrays(M&, T**, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubx_single_molecule/max_subi_ll.cpp:294:58: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/max_subi_ll.cpp:294:58: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_from_arrays(M&, T**, int, int) [with M = boost::numeric::ublas::matrix<int>, T = int]:
qubx_single_molecule/max_subi_ll.cpp:296:67: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/max_subi_ll.cpp:296:67: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_from_array(M&, T*, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubx_single_molecule/max_subi_ll.cpp:306:39: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_to_partition(boost::numeric::ublas::matrix<T>&, int, int, int*, int*, boost::numeric::ublas::matrix<T>&) [with T = double]:
qubx_single_molecule/max_subi_ll.cpp:368:72: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:120:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h:120:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_from_partition(boost::numeric::ublas::matrix<T>&, int, int, int*, int*, boost::numeric::ublas::matrix<T>&) [with T = double]:
qubx_single_molecule/max_subi_ll.cpp:506:98: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:130:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h:130:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
mkdir -p obj/qubx_single_molecule/
mkdir -p obj/qubx_single_molecule/
qubx_single_molecule/max_inter_ll.cpp: In function int inter_ll(int, int*, double*, double**, double**, int**, int**, double*, double, int, int*, int**, float**, double*):
qubx_single_molecule/max_inter_ll.cpp:146:31: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_inter_ll.cpp:181:31: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_inter_ll.cpp:191:31: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_inter_ll.cpp:194:32: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_inter_ll.cpp:220:31: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_inter_ll.cpp:243:33: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubx_single_molecule/max_inter_ll.cpp:266:25: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
In file included from qubx_single_molecule/../qubfast/max_ll_util.h:22:0,
from qubx_single_molecule/max_inter_ll.cpp:50:
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_from_arrays(M&, T**, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubx_single_molecule/max_inter_ll.cpp:90:58: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/max_inter_ll.cpp:90:58: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_from_arrays(M&, T**, int, int) [with M = boost::numeric::ublas::matrix<int>, T = int]:
qubx_single_molecule/max_inter_ll.cpp:92:67: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/max_inter_ll.cpp:92:67: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_from_array(M&, T*, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubx_single_molecule/max_inter_ll.cpp:100:41: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h: In function void matrix_to_partition(boost::numeric::ublas::matrix<T>&, int, int, int*, int*, boost::numeric::ublas::matrix<T>&) [with T = double]:
qubx_single_molecule/max_inter_ll.cpp:149:72: instantiated from here
qubx_single_molecule/../qubfast/ublas_plus.h:120:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubx_single_molecule/../qubfast/ublas_plus.h:120:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -shared -fPIC -lm -g -fopenmp -lgomp -L . -lqubfast -o libmaxill.so obj/qubx_single_molecule/qubx_idealize.o obj/qubx_single_molecule/max_subi_ll.o obj/qubx_single_molecule/maxill_misc.o obj/qubx_single_molecule/max_inter_ll.o
htmlify/convert_and_place.py -o api qubx_single_molecule/max_inter_ll.py
max_inter_ll.py
htmlify/mathcode2html.py --force 'qubx_single_molecule/max_inter_ll.py'
(' Converting qubx_single_molecule/max_inter_ll.py to qubx_single_molecule/max_inter_ll.py.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/max_inter_ll.py.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/qubx_idealize.py
qubx_idealize.py
htmlify/mathcode2html.py --force 'qubx_single_molecule/qubx_idealize.py'
(' Converting qubx_single_molecule/qubx_idealize.py to qubx_single_molecule/qubx_idealize.py.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/qubx_idealize.py.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/max_inter_ll.cpp
max_inter_ll.cpp
htmlify/mathcode2html.py --force 'qubx_single_molecule/max_inter_ll.cpp'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/max_inter_ll.cpp to qubx_single_molecule/max_inter_ll.cpp.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/max_inter_ll.cpp.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/max_subi_ll.h
max_subi_ll.h
htmlify/mathcode2html.py --force 'qubx_single_molecule/max_subi_ll.h'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/max_subi_ll.h to qubx_single_molecule/max_subi_ll.h.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/max_subi_ll.h.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/max_subi_ll.cpp
max_subi_ll.cpp
htmlify/mathcode2html.py --force 'qubx_single_molecule/max_subi_ll.cpp'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/max_subi_ll.cpp to qubx_single_molecule/max_subi_ll.cpp.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/max_subi_ll.cpp.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/maxill_misc.cpp
maxill_misc.cpp
htmlify/mathcode2html.py --force 'qubx_single_molecule/maxill_misc.cpp'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/maxill_misc.cpp to qubx_single_molecule/maxill_misc.cpp.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/maxill_misc.cpp.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/maxill_misc.h
maxill_misc.h
htmlify/mathcode2html.py --force 'qubx_single_molecule/maxill_misc.h'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/maxill_misc.h to qubx_single_molecule/maxill_misc.h.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/maxill_misc.h.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/qubx_idealize.cpp
qubx_idealize.cpp
htmlify/mathcode2html.py --force 'qubx_single_molecule/qubx_idealize.cpp'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/qubx_idealize.cpp to qubx_single_molecule/qubx_idealize.cpp.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/qubx_idealize.cpp.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/max_inter_ll.h
max_inter_ll.h
htmlify/mathcode2html.py --force 'qubx_single_molecule/max_inter_ll.h'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/max_inter_ll.h to qubx_single_molecule/max_inter_ll.h.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/max_inter_ll.h.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/maxill.h
maxill.h
htmlify/mathcode2html.py --force 'qubx_single_molecule/maxill.h'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/maxill.h to qubx_single_molecule/maxill.h.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/maxill.h.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/max_subi_ll.py
max_subi_ll.py
htmlify/mathcode2html.py --force 'qubx_single_molecule/max_subi_ll.py'
(' Converting qubx_single_molecule/max_subi_ll.py to qubx_single_molecule/max_subi_ll.py.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/max_subi_ll.py.html' 'api/qubx_single_molecule'
('', '')
htmlify/convert_and_place.py -o api qubx_single_molecule/qubx_idealize.h
qubx_idealize.h
htmlify/mathcode2html.py --force 'qubx_single_molecule/qubx_idealize.h'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_single_molecule/qubx_idealize.h to qubx_single_molecule/qubx_idealize.h.html\n', '')
mkdir -p 'api/qubx_single_molecule'
('', '')
mv 'qubx_single_molecule/qubx_idealize.h.html' 'api/qubx_single_molecule'
('', '')
sending incremental file list
api/
api/qubx_single_molecule/
api/qubx_single_molecule/index.html
api/qubx_single_molecule/max_inter_ll.cpp.html
api/qubx_single_molecule/max_inter_ll.h.html
api/qubx_single_molecule/max_inter_ll.py.html
api/qubx_single_molecule/max_subi_ll.cpp.html
api/qubx_single_molecule/max_subi_ll.h.html
api/qubx_single_molecule/max_subi_ll.py.html
api/qubx_single_molecule/maxill.h.html
api/qubx_single_molecule/maxill_misc.cpp.html
api/qubx_single_molecule/maxill_misc.h.html
api/qubx_single_molecule/qubx_idealize.cpp.html
api/qubx_single_molecule/qubx_idealize.h.html
api/qubx_single_molecule/qubx_idealize.py.html
qubx_single_molecule/
qubx_single_molecule/Makefile_qubx_single_molecule.in
qubx_single_molecule/README.txt
qubx_single_molecule/make_deb.sh
qubx_single_molecule/max_inter_ll.cpp
qubx_single_molecule/max_inter_ll.h
qubx_single_molecule/max_inter_ll.py
qubx_single_molecule/max_subi_ll.cpp
qubx_single_molecule/max_subi_ll.h
qubx_single_molecule/max_subi_ll.py
qubx_single_molecule/maxill.h
qubx_single_molecule/maxill.sln
qubx_single_molecule/maxill.vcproj
qubx_single_molecule/maxill_misc.cpp
qubx_single_molecule/maxill_misc.h
qubx_single_molecule/qubx_idealize.cpp
qubx_single_molecule/qubx_idealize.h
qubx_single_molecule/qubx_idealize.py
qubx_single_molecule/qubx_plugin_about.txt
qubx_single_molecule/qubx_plugin_fini.py
qubx_single_molecule/qubx_plugin_imports.txt
qubx_single_molecule/qubx_plugin_init.py
qubx_single_molecule/qubx_plugin_name.txt
qubx_single_molecule/qubx_single_molecule.nsi
qubx_single_molecule/qubx_single/
qubx_single_molecule/qubx_single/__init__.py
qubx_single_molecule/qubx_single/dur_hist.py
qubx_single_molecule/qubx_single/idealize.py
qubx_single_molecule/qubx_single/rates.py
sent 410887 bytes received 788 bytes 823350.00 bytes/sec
total size is 408105 speedup is 0.99
sending incremental file list
rsync: link_stat "/home/aluchko/qub-express-fedora/api/*qubx_single[.-]*" failed: No such file or directory (2)
index.html
max_inter_ll.cpp.html
max_inter_ll.h.html
max_inter_ll.py.html
max_subi_ll.cpp.html
max_subi_ll.h.html
max_subi_ll.py.html
maxill.h.html
maxill_misc.cpp.html
maxill_misc.h.html
qubx_idealize.cpp.html
qubx_idealize.h.html
qubx_idealize.py.html
sent 181511 bytes received 259 bytes 363540.00 bytes/sec
total size is 180591 speedup is 0.99
rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1052) [sender=3.0.8]
make: [maxill_zip] Error 23 (ignored)
rm: cannot remove `/dev/shm/qubx_single_molecule/qubx_single_molecule.zip': No such file or directory
make: [maxill_zip] Error 1 (ignored)
adding: qubx_single_molecule/ (stored 0%)
adding: qubx_single_molecule/qubx_idealize.py.html (deflated 70%)
adding: qubx_single_molecule/qubx_idealize.h.html (deflated 59%)
adding: qubx_single_molecule/qubx_idealize.cpp.html (deflated 75%)
adding: qubx_single_molecule/maxill_misc.h.html (deflated 55%)
adding: qubx_single_molecule/maxill_misc.cpp.html (deflated 56%)
adding: qubx_single_molecule/maxill.h.html (deflated 57%)
adding: qubx_single_molecule/max_subi_ll.py.html (deflated 69%)
adding: qubx_single_molecule/max_subi_ll.h.html (deflated 62%)
adding: qubx_single_molecule/max_subi_ll.cpp.html (deflated 71%)
adding: qubx_single_molecule/max_inter_ll.py.html (deflated 70%)
adding: qubx_single_molecule/max_inter_ll.h.html (deflated 59%)
adding: qubx_single_molecule/max_inter_ll.cpp.html (deflated 68%)
adding: qubx_single_molecule/index.html (deflated 57%)
adding: qubx_single_molecule/qubx_single_molecule.nsi (deflated 56%)
adding: qubx_single_molecule/qubx_plugin_name.txt (stored 0%)
adding: qubx_single_molecule/qubx_plugin_init.py (deflated 51%)
adding: qubx_single_molecule/qubx_plugin_imports.txt (deflated 30%)
adding: qubx_single_molecule/qubx_plugin_fini.py (deflated 61%)
adding: qubx_single_molecule/qubx_plugin_about.txt (deflated 26%)
adding: qubx_single_molecule/qubx_idealize.py (deflated 71%)
adding: qubx_single_molecule/qubx_idealize.h (deflated 59%)
adding: qubx_single_molecule/qubx_idealize.cpp (deflated 75%)
adding: qubx_single_molecule/maxill_misc.h (deflated 49%)
adding: qubx_single_molecule/maxill_misc.cpp (deflated 52%)
adding: qubx_single_molecule/maxill.vcproj (deflated 77%)
adding: qubx_single_molecule/maxill.sln (deflated 61%)
adding: qubx_single_molecule/maxill.h (deflated 54%)
adding: qubx_single_molecule/max_subi_ll.py (deflated 66%)
adding: qubx_single_molecule/max_subi_ll.h (deflated 61%)
adding: qubx_single_molecule/max_subi_ll.cpp (deflated 70%)
adding: qubx_single_molecule/max_inter_ll.py (deflated 67%)
adding: qubx_single_molecule/max_inter_ll.h (deflated 58%)
adding: qubx_single_molecule/max_inter_ll.cpp (deflated 68%)
adding: qubx_single_molecule/make_deb.sh (deflated 53%)
adding: qubx_single_molecule/README.txt (deflated 48%)
adding: qubx_single_molecule/Makefile_qubx_single_molecule.in (deflated 75%)
adding: qubx_single_molecule/toc-qubx_single.rates-module.html (deflated 87%)
adding: qubx_single_molecule/toc-qubx_single.idealize-module.html (deflated 87%)
adding: qubx_single_molecule/toc-qubx_single.dur_hist-module.html (deflated 88%)
adding: qubx_single_molecule/toc-qubx_single-module.html (deflated 45%)
adding: qubx_single_molecule/qubx_single.rates.SingleSignals-class.html (deflated 81%)
adding: qubx_single_molecule/qubx_single.rates.SinglePlex-class.html (deflated 79%)
adding: qubx_single_molecule/qubx_single.rates.Requestable-class.html (deflated 80%)
adding: qubx_single_molecule/qubx_single.rates.RatesFace-class.html (deflated 88%)
adding: qubx_single_molecule/qubx_single.rates.Product-class.html (deflated 82%)
adding: qubx_single_molecule/qubx_single.rates-pysrc.html (deflated 90%)
adding: qubx_single_molecule/qubx_single.rates-module.html (deflated 91%)
adding: qubx_single_molecule/qubx_single.idealize.IdlFace-class.html (deflated 88%)
adding: qubx_single_molecule/qubx_single.idealize-pysrc.html (deflated 90%)
adding: qubx_single_molecule/qubx_single.idealize-module.html (deflated 91%)
adding: qubx_single_molecule/qubx_single.dur_hist.OneHist-class.html (deflated 78%)
adding: qubx_single_molecule/qubx_single.dur_hist.DurHistFace-class.html (deflated 89%)
adding: qubx_single_molecule/qubx_single.dur_hist.DurHistCopyDialog-class.html (deflated 84%)
adding: qubx_single_molecule/qubx_single.dur_hist-pysrc.html (deflated 90%)
adding: qubx_single_molecule/qubx_single.dur_hist-module.html (deflated 92%)
adding: qubx_single_molecule/qubx_single-pysrc.html (deflated 70%)
adding: qubx_single_molecule/qubx_single-module.html (deflated 74%)
adding: qubx_single_molecule/maxill.lib (deflated 80%)
adding: qubx_single_molecule/maxill.exp (deflated 67%)
adding: qubx_single_molecule/maxill.dll (deflated 56%)
adding: qubx_single_molecule/qubx_single/ (stored 0%)
adding: qubx_single_molecule/qubx_single/rates.py (deflated 77%)
adding: qubx_single_molecule/qubx_single/idealize.py (deflated 75%)
adding: qubx_single_molecule/qubx_single/dur_hist.py (deflated 73%)
adding: qubx_single_molecule/qubx_single/__init__.py (deflated 2%)
mv /dev/shm/qubx_single_molecule.zip api/qubx_single_molecule
mkdir -p obj/qubx_macroscopic
g++ -W -Wall -Wextra -pedantic -Wshadow -Wpointer-arith -Wcast-align -Wwrite-strings -Wredundant-decls -Wno-long-long -Wconversion -g -I./common -fPIC -O3 -DNDEBUG -fopenmp -MMD -MP -MT "obj/qubx_macroscopic/max_mac_ll.d obj/qubx_macroscopic/max_mac_ll.o" -c qubx_macroscopic/max_mac_ll.cpp -o obj/qubx_macroscopic/max_mac_ll.o
qubx_macroscopic/max_mac_ll.cpp:114:6: warning: unused parameter lbl [-Wunused-parameter]
qubx_macroscopic/max_mac_ll.cpp: In function void mplex_idl(int, int*, int**, float**, double**, int*, int*, float*, stimmap&):
qubx_macroscopic/max_mac_ll.cpp:158:9: warning: variable changing set but not used [-Wunused-but-set-variable]
g++ -shared -fPIC -lm -g -fopenmp -lgomp -L . -lqubfast -o libmaxmll.so obj/qubx_macroscopic/max_mac_ll.o
htmlify/convert_and_place.py -o api qubx_macroscopic/max_mac_ll.h
max_mac_ll.h
htmlify/mathcode2html.py --force 'qubx_macroscopic/max_mac_ll.h'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_macroscopic/max_mac_ll.h to qubx_macroscopic/max_mac_ll.h.html\n', '')
mkdir -p 'api/qubx_macroscopic'
('', '')
mv 'qubx_macroscopic/max_mac_ll.h.html' 'api/qubx_macroscopic'
('', '')
htmlify/convert_and_place.py -o api qubx_macroscopic/max_mac_ll.py
max_mac_ll.py
htmlify/mathcode2html.py --force 'qubx_macroscopic/max_mac_ll.py'
(' Converting qubx_macroscopic/max_mac_ll.py to qubx_macroscopic/max_mac_ll.py.html\n', '')
mkdir -p 'api/qubx_macroscopic'
('', '')
mv 'qubx_macroscopic/max_mac_ll.py.html' 'api/qubx_macroscopic'
('', '')
htmlify/convert_and_place.py -o api qubx_macroscopic/max_mac_ll.cpp
max_mac_ll.cpp
htmlify/mathcode2html.py --force 'qubx_macroscopic/max_mac_ll.cpp'
(' \n Warning: Unrecognized extension, will proceed\n with no replacement of comment characters\n Converting qubx_macroscopic/max_mac_ll.cpp to qubx_macroscopic/max_mac_ll.cpp.html\n', '')
mkdir -p 'api/qubx_macroscopic'
('', '')
mv 'qubx_macroscopic/max_mac_ll.cpp.html' 'api/qubx_macroscopic'
('', '')
sending incremental file list
api/qubx_macroscopic/
api/qubx_macroscopic/index.html
api/qubx_macroscopic/max_mac_ll.cpp.html
api/qubx_macroscopic/max_mac_ll.h.html
api/qubx_macroscopic/max_mac_ll.py.html
qubx_macroscopic/
qubx_macroscopic/Makefile_qubx_macroscopic.in
qubx_macroscopic/README.txt
qubx_macroscopic/make_deb.sh
qubx_macroscopic/max_mac_ll.cpp
qubx_macroscopic/max_mac_ll.h
qubx_macroscopic/max_mac_ll.py
qubx_macroscopic/maxmll.h
qubx_macroscopic/maxmll.sln
qubx_macroscopic/maxmll.vcproj
qubx_macroscopic/qubx_macroscopic.nsi
qubx_macroscopic/qubx_plugin_about.txt
qubx_macroscopic/qubx_plugin_fini.py
qubx_macroscopic/qubx_plugin_imports.txt
qubx_macroscopic/qubx_plugin_init.py
qubx_macroscopic/qubx_plugin_name.txt
qubx_macroscopic/qubx_mac/
qubx_macroscopic/qubx_mac/__init__.py
qubx_macroscopic/qubx_mac/qubx_plugin.py
qubx_macroscopic/qubx_mac/rates.py
sent 249656 bytes received 443 bytes 500198.00 bytes/sec
total size is 248083 speedup is 0.99
sending incremental file list
rsync: link_stat "/home/aluchko/qub-express-fedora/api/*qubx_mac[.-]*" failed: No such file or directory (2)
index.html
max_mac_ll.cpp.html
max_mac_ll.h.html
max_mac_ll.py.html
sent 89902 bytes received 88 bytes 179980.00 bytes/sec
total size is 89599 speedup is 1.00
rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1052) [sender=3.0.8]
make: [maxmll_zip] Error 23 (ignored)
rm: cannot remove `/dev/shm/qubx_macroscopic/qubx_macroscopic.zip': No such file or directory
make: [maxmll_zip] Error 1 (ignored)
adding: qubx_macroscopic/ (stored 0%)
adding: qubx_macroscopic/max_mac_ll.py.html (deflated 73%)
adding: qubx_macroscopic/max_mac_ll.h.html (deflated 62%)
adding: qubx_macroscopic/max_mac_ll.cpp.html (deflated 80%)
adding: qubx_macroscopic/index.html (deflated 57%)
adding: qubx_macroscopic/qubx_plugin_name.txt (stored 0%)
adding: qubx_macroscopic/qubx_plugin_init.py (deflated 15%)
adding: qubx_macroscopic/qubx_plugin_imports.txt (deflated 27%)
adding: qubx_macroscopic/qubx_plugin_fini.py (deflated 27%)
adding: qubx_macroscopic/qubx_plugin_about.txt (deflated 23%)
adding: qubx_macroscopic/qubx_macroscopic.nsi (deflated 56%)
adding: qubx_macroscopic/maxmll.vcproj (deflated 79%)
adding: qubx_macroscopic/maxmll.sln (deflated 65%)
adding: qubx_macroscopic/maxmll.h (deflated 54%)
adding: qubx_macroscopic/max_mac_ll.py (deflated 74%)
adding: qubx_macroscopic/max_mac_ll.h (deflated 62%)
adding: qubx_macroscopic/max_mac_ll.cpp (deflated 80%)
adding: qubx_macroscopic/make_deb.sh (deflated 53%)
adding: qubx_macroscopic/README.txt (stored 0%)
adding: qubx_macroscopic/Makefile_qubx_macroscopic.in (deflated 74%)
adding: qubx_macroscopic/qubx_mac/ (stored 0%)
adding: qubx_macroscopic/qubx_mac/rates.py (deflated 75%)
adding: qubx_macroscopic/qubx_mac/qubx_plugin.py (deflated 72%)
adding: qubx_macroscopic/qubx_mac/__init__.py (stored 0%)
mv /dev/shm/qubx_macroscopic.zip api/qubx_macroscopic