# make
cat: /etc/lsb-release: No such file or directory
mkdir -p obj/qubfast/
mkdir -p obj/qubfast/
qubfast/milutil.cpp:79:6: warning: unused parameter pchMessage [-Wunused-parameter]
mkdir -p obj/qubfast/
qubfast/decode_acquirefile_samples.cpp: In function void decode_acquirefile_samples(char*, short int*, int, int):
qubfast/decode_acquirefile_samples.cpp:45:14: warning: conversion to short int from int may alter its value [-Wconversion]
qubfast/decode_acquirefile_samples.cpp:30:7: warning: unused variable i_dest [-Wunused-variable]
qubfast/decode_acquirefile_samples.cpp:31:7: warning: unused variable i_src [-Wunused-variable]
mkdir -p obj/qubfast/
mkdir -p obj/qubfast/
In file included from qubfast/qub_kalman.h:22:0,
from qubfast/qub_kalman.cpp:43:
qubfast/ublas_plus.h: In function void fill_identity(boost::numeric::ublas::matrix<T>&) [with T = double]:
qubfast/qub_kalman.cpp:62:20: instantiated from here
qubfast/ublas_plus.h:140:21: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/qub_kalman.cpp:62:20: instantiated from here
qubfast/ublas_plus.h:141:21: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
mkdir -p obj/qubfast/
qubfast/matrixutil.cpp: In function int hqr(double**, int, double*, double*):
qubfast/matrixutil.cpp:880:7: warning: p may be used uninitialized in this function [-Wuninitialized]
qubfast/matrixutil.cpp:891:14: warning: q may be used uninitialized in this function [-Wuninitialized]
qubfast/matrixutil.cpp:892:14: warning: r may be used uninitialized in this function [-Wuninitialized]
mkdir -p obj/qubfast/
qubfast/qub_findloops.cpp: In function int qub_findloops(int, int, int*, int*, int*):
qubfast/qub_findloops.cpp:111:16: warning: conversion to std::map<int, std::list<int> >::key_type from size_t may alter its value [-Wconversion]
qubfast/qub_findloops.cpp:111:42: warning: conversion to std::list<int>::value_type from long unsigned int may alter its value [-Wconversion]
qubfast/qub_findloops.cpp:112:27: warning: conversion to std::map<int, std::list<int> >::key_type from long unsigned int may alter its value [-Wconversion]
qubfast/qub_findloops.cpp:112:42: warning: conversion to std::list<int>::value_type from size_t may alter its value [-Wconversion]
qubfast/qub_findloops.cpp:118:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/qub_findloops.cpp:118:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/qub_findloops.cpp:119:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/qub_findloops.cpp:119:64: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/qub_findloops.cpp:133:35: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
mkdir -p obj/qubfast/
mkdir -p obj/qubfast/
qubfast/qub_idlstim.cpp: In function int FindKnownAmp(std::vector<double>&, double, double, double&):
qubfast/qub_idlstim.cpp:60:27: warning: conversion to int from std::vector<double>::size_type may alter its value [-Wconversion]
qubfast/qub_idlstim.cpp: In constructor Consolidator::Consolidator(std::vector<int>&, std::vector<int>&, std::map<double, int>&, std::vector<double>&, std::vector<double>&, int&):
qubfast/qub_idlstim.cpp:107:27: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubfast/qub_idlstim.cpp: In member function void Consolidator::consolidate(double):
qubfast/qub_idlstim.cpp:133:2: warning: declaration of delta shadows a member of 'this' [-Wshadow]
qubfast/qub_idlstim.cpp: In member function void Consolidator::renumberClasses():
qubfast/qub_idlstim.cpp:211:23: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubfast/qub_idlstim.cpp: In member function void EventMaker::add(double, int):
qubfast/qub_idlstim.cpp:253:29: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubfast/qub_idlstim.cpp: In member function int EventMaker::nextEvent(int&, int&, int):
qubfast/qub_idlstim.cpp:276:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/qub_idlstim.cpp: In member function int EventMaker::findOrAddCls(double):
qubfast/qub_idlstim.cpp:298:27: warning: conversion to int from std::vector<double>::size_type may alter its value [-Wconversion]
qubfast/qub_idlstim.cpp: In member function int qub_idlstim::get_amp_count():
qubfast/qub_idlstim.cpp:433:37: warning: conversion to int from std::vector<double>::size_type may alter its value [-Wconversion]
qubfast/qub_idlstim.cpp: In member function int qub_idlstim::get_amps(double*):
qubfast/qub_idlstim.cpp:438:38: warning: conversion to int from std::vector<double>::size_type may alter its value [-Wconversion]
In file included from qubfast/qub_idlstim.cpp:51:0:
qubfast/QUB_Heap.h: In member function int QUB_Heap<T>::size() [with T = ConsolidInterval]:
qubfast/qub_idlstim.cpp:141:22: instantiated from here
qubfast/QUB_Heap.h:61:20: warning: conversion to int from std::vector<ConsolidInterval, std::allocator<ConsolidInterval> >::size_type may alter its value [-Wconversion]
qubfast/QUB_Heap.h: In member function void QUB_Heap<T>::erase(QUB_Heap<T>::iterator&) [with T = ConsolidInterval, QUB_Heap<T>::iterator = __gnu_cxx::__normal_iterator<ConsolidInterval*, std::vector<ConsolidInterval, std::allocator<ConsolidInterval> > >]:
qubfast/qub_idlstim.cpp:173:25: instantiated from here
qubfast/QUB_Heap.h:70:29: warning: conversion to int from long int may alter its value [-Wconversion]
mkdir -p obj/qubfast/
mkdir -p obj/qubfast/
qubfast/qub_doseresponse.cpp: In function int qub_doseresponse_equil_result(void*, int, float*, float*, float*):
qubfast/qub_doseresponse.cpp:107:37: warning: conversion to double from std::vector<RunningMean*>::size_type may alter its value [-Wconversion]
qubfast/qub_doseresponse.cpp:118:38: warning: conversion to double from std::map<float, RunningMean>::size_type may alter its value [-Wconversion]
qubfast/qub_doseresponse.cpp: In function int qub_doseresponse_peak_result(void*, int, float*, float*):
qubfast/qub_doseresponse.cpp:195:42: warning: conversion to double from std::map<float, float>::size_type may alter its value [-Wconversion]
mkdir -p obj/qubfast/
qubfast/qub_constraints.cpp:132:17: warning: unused parameter K1 [-Wunused-parameter]
qubfast/qub_constraints.cpp:132:17: warning: unused parameter L [-Wunused-parameter]
qubfast/qub_constraints.cpp:163:17: warning: unused parameter K1 [-Wunused-parameter]
qubfast/qub_constraints.cpp:163:17: warning: unused parameter L [-Wunused-parameter]
qubfast/qub_constraints.cpp:163:17: warning: unused parameter V [-Wunused-parameter]
qubfast/qub_constraints.cpp:177:17: warning: unused parameter K0 [-Wunused-parameter]
qubfast/qub_constraints.cpp:177:17: warning: unused parameter L [-Wunused-parameter]
qubfast/qub_constraints.cpp:177:17: warning: unused parameter V [-Wunused-parameter]
qubfast/qub_constraints.cpp:193:17: warning: unused parameter K1 [-Wunused-parameter]
qubfast/qub_constraints.cpp:193:17: warning: unused parameter L [-Wunused-parameter]
qubfast/qub_constraints.cpp:193:17: warning: unused parameter V [-Wunused-parameter]
qubfast/qub_constraints.cpp:212:17: warning: unused parameter K0 [-Wunused-parameter]
qubfast/qub_constraints.cpp:212:17: warning: unused parameter L [-Wunused-parameter]
qubfast/qub_constraints.cpp:212:17: warning: unused parameter V [-Wunused-parameter]
qubfast/qub_constraints.cpp:229:16: warning: unused parameter K0 [-Wunused-parameter]
qubfast/qub_constraints.cpp:750:17: warning: unused parameter A [-Wunused-parameter]
qubfast/qub_constraints.cpp:750:17: warning: unused parameter B [-Wunused-parameter]
qubfast/qub_constraints.cpp:759:17: warning: unused parameter Ainv [-Wunused-parameter]
In file included from qubfast/qub_constraints.h:22:0,
from qubfast/qub_constraints.cpp:53:
qubfast/ublas_plus.h: In function void matrix_from_array(M&, T*, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubfast/qub_constraints.cpp:682:37: instantiated from here
qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/qub_constraints.cpp:682:37: instantiated from here
qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h: In function void matrix_from_arrays(M&, T**, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubfast/qub_constraints.cpp:753:38: instantiated from here
qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h: In function void matrix_to_array(M&, T*, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubfast/qub_constraints.cpp:756:34: instantiated from here
qubfast/ublas_plus.h:100:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h:100:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
mkdir -p obj/qubfast/
qubfast/qub_simulate.cpp:303:5: warning: unused parameter clazz [-Wunused-parameter]
qubfast/qub_simulate.cpp:384:5: warning: unused parameter clazz [-Wunused-parameter]
qubfast/qub_simulate.cpp:384:5: warning: unused parameter pctCB [-Wunused-parameter]
qubfast/qub_simulate.cpp:384:5: warning: unused parameter pctObj [-Wunused-parameter]
qubfast/qub_simulate.cpp: In function int qub_simulate(double, int, int, int*, double*, double*, double*, int*, int*, double, double, double*, double*, int, int, int*, float**, float*, int*, int*, StatusCallback, void*):
qubfast/qub_simulate.cpp:492:69: warning: integer overflow in expression [-Woverflow]
In file included from qubfast/max_ll_util.h:22:0,
from qubfast/qub_simulate.cpp:67:
qubfast/ublas_plus.h: In function void matrix_from_array(M&, T*, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubfast/qub_simulate.cpp:544:80: instantiated from here
qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/qub_simulate.cpp:544:80: instantiated from here
qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h: In function void matrix_from_array(M&, T*, int, int) [with M = boost::numeric::ublas::matrix<int>, T = int]:
qubfast/qub_simulate.cpp:546:75: instantiated from here
qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/qub_simulate.cpp:546:75: instantiated from here
qubfast/ublas_plus.h:80:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
mkdir -p obj/qubfast/
qubfast/qub_dfilter.cpp: In function bool DFII_Init(std::string, Filter_t<Precision>*, Precision) [with Precision = float, std::string = std::basic_string<char>]:
qubfast/qub_dfilter.cpp:305:53: instantiated from here
qubfast/qub_dfilter.cpp:224:23: warning: conversion to int from std::vector<std::pair<int, double> >::size_type may alter its value [-Wconversion]
qubfast/qub_dfilter.cpp:225:23: warning: conversion to int from std::vector<std::pair<int, double> >::size_type may alter its value [-Wconversion]
qubfast/qub_dfilter.cpp:226:23: warning: conversion to int from std::vector<std::pair<int, double> >::size_type may alter its value [-Wconversion]
qubfast/qub_dfilter.cpp: In function bool DFII_Init(std::string, Filter_t<Precision>*, Precision) [with Precision = double, std::string = std::basic_string<char>]:
qubfast/qub_dfilter.cpp:339:54: instantiated from here
qubfast/qub_dfilter.cpp:224:23: warning: conversion to int from std::vector<std::pair<int, double> >::size_type may alter its value [-Wconversion]
qubfast/qub_dfilter.cpp:225:23: warning: conversion to int from std::vector<std::pair<int, double> >::size_type may alter its value [-Wconversion]
qubfast/qub_dfilter.cpp:226:23: warning: conversion to int from std::vector<std::pair<int, double> >::size_type may alter its value [-Wconversion]
qubfast/qub_dfilter.cpp: In function float DFII32(float, Filter32_p):
qubfast/qub_dfilter.cpp:125:5: warning: Dkp1 may be used uninitialized in this function [-Wuninitialized]
qubfast/qub_dfilter.cpp:102:16: note: Dkp1 was declared here
qubfast/qub_dfilter.cpp: In function double DFII64(double, Filter64_p):
qubfast/qub_dfilter.cpp:125:5: warning: Dkp1 may be used uninitialized in this function [-Wuninitialized]
qubfast/qub_dfilter.cpp:102:16: note: Dkp1 was declared here
mkdir -p obj/qubfast/
qubfast/qub_filter.cpp:55:6: warning: unused parameter msg [-Wunused-parameter]
qubfast/qub_filter.cpp: In function T* gsfir(double, int*) [with T = float]:
qubfast/qub_filter.cpp:402:36: instantiated from here
qubfast/qub_filter.cpp:305:11: warning: conversion to float from int may alter its value [-Wconversion]
qubfast/qub_filter.cpp: In function void convlv0(T*, long int, T*, long int, int, T*) [with T = double]:
qubfast/qub_filter.cpp:351:4: instantiated from void ovrlap(T*, long int, T*, long int, T*, int) [with T = double]
qubfast/qub_filter.cpp:382:50: instantiated from here
qubfast/qub_filter.cpp:252:5: warning: conversion to int from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:351:4: instantiated from void ovrlap(T*, long int, T*, long int, T*, int) [with T = double]
qubfast/qub_filter.cpp:382:50: instantiated from here
qubfast/qub_filter.cpp:267:4: warning: conversion to double from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:268:4: warning: conversion to double from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:274:4: warning: conversion to double from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:275:4: warning: conversion to double from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp: In function void convlv0(T*, long int, T*, long int, int, T*) [with T = float]:
qubfast/qub_filter.cpp:351:4: instantiated from void ovrlap(T*, long int, T*, long int, T*, int) [with T = float]
qubfast/qub_filter.cpp:406:50: instantiated from here
qubfast/qub_filter.cpp:252:5: warning: conversion to int from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:351:4: instantiated from void ovrlap(T*, long int, T*, long int, T*, int) [with T = float]
qubfast/qub_filter.cpp:406:50: instantiated from here
qubfast/qub_filter.cpp:267:4: warning: conversion to float from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:268:4: warning: conversion to float from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:274:4: warning: conversion to float from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:275:4: warning: conversion to float from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp: In function void realft0(T*, long int, int) [with T = double]:
qubfast/qub_filter.cpp:280:2: instantiated from void convlv0(T*, long int, T*, long int, int, T*) [with T = double]
qubfast/qub_filter.cpp:351:4: instantiated from void ovrlap(T*, long int, T*, long int, T*, int) [with T = double]
qubfast/qub_filter.cpp:382:50: instantiated from here
qubfast/qub_filter.cpp:191:2: warning: conversion to double from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp: In function void realft0(T*, long int, int) [with T = float]:
qubfast/qub_filter.cpp:280:2: instantiated from void convlv0(T*, long int, T*, long int, int, T*) [with T = float]
qubfast/qub_filter.cpp:351:4: instantiated from void ovrlap(T*, long int, T*, long int, T*, int) [with T = float]
qubfast/qub_filter.cpp:406:50: instantiated from here
qubfast/qub_filter.cpp:191:2: warning: conversion to double from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp:191:2: warning: conversion to float from double may alter its value [-Wconversion]
qubfast/qub_filter.cpp: In function void four1_0(T*, long int, int) [with T = double]:
qubfast/qub_filter.cpp:162:2: instantiated from void twofft0(T*, T*, T*, T*, long int) [with T = double]
qubfast/qub_filter.cpp:260:5: instantiated from void convlv0(T*, long int, T*, long int, int, T*) [with T = double]
qubfast/qub_filter.cpp:351:4: instantiated from void ovrlap(T*, long int, T*, long int, T*, int) [with T = double]
qubfast/qub_filter.cpp:382:50: instantiated from here
qubfast/qub_filter.cpp:121:3: warning: conversion to double from long int may alter its value [-Wconversion]
qubfast/qub_filter.cpp: In function void four1_0(T*, long int, int) [with T = float]:
qubfast/qub_filter.cpp:162:2: instantiated from void twofft0(T*, T*, T*, T*, long int) [with T = float]
qubfast/qub_filter.cpp:260:5: instantiated from void convlv0(T*, long int, T*, long int, int, T*) [with T = float]
qubfast/qub_filter.cpp:351:4: instantiated from void ovrlap(T*, long int, T*, long int, T*, int) [with T = float]
qubfast/qub_filter.cpp:406:50: instantiated from here
qubfast/qub_filter.cpp:121:3: warning: conversion to double from long int may alter its value [-Wconversion]
mkdir -p obj/qubfast/
mkdir -p obj/qubfast/
qubfast/qubidl.cpp:275:23: warning: unused parameter other [-Wunused-parameter]
qubfast/qubidl.cpp: In member function int QUB_IdlChunk::size():
qubfast/qubidl.cpp:482:22: warning: conversion to int from std::map<int, QUB_IdlDwell>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp:483:20: warning: conversion to int from std::vector<QUB_IdlDwell>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function void QUB_IdlChunk::setupStorage(int):
qubfast/qubidl.cpp:493:31: warning: conversion to int from std::vector<QUB_IdlDwell>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: At global scope:
qubfast/qubidl.cpp:580:6: warning: unused parameter atBegin [-Wunused-parameter]
qubfast/qubidl.cpp:580:6: warning: unused parameter atEnd [-Wunused-parameter]
qubfast/qubidl.cpp: In member function void QUB_IdlMaps::insert(int, int):
qubfast/qubidl.cpp:782:19: warning: conversion to int from std::vector<QUB_IdlDwell>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function void QUB_IdlMaps::remove(int, int):
qubfast/qubidl.cpp:808:19: warning: conversion to int from std::vector<QUB_IdlDwell>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function void QUB_IdlSegments::getSegRange(int, int, int&, int&):
qubfast/qubidl.cpp:1314:23: warning: conversion to int from std::vector<QUB_IdlSeg*>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function int QUB_IdlSegments::getSegCount():
qubfast/qubidl.cpp:1359:19: warning: conversion to int from std::vector<QUB_IdlSeg*>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function int QUB_IdlSegments::getDwellCount(int, int, int):
qubfast/qubidl.cpp:1382:29: warning: conversion to int from std::vector<QUB_IdlSeg*>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function int QUB_IdlSegments::getDwellCountAndGaps(int, int):
qubfast/qubidl.cpp:1398:29: warning: conversion to int from std::vector<QUB_IdlSeg*>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function int QUB_IdlSegments::getDwells(int, int, int, int*, int*, int*, float*):
qubfast/qubidl.cpp:1414:29: warning: conversion to int from std::vector<QUB_IdlSeg*>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function int QUB_IdlSegments::getDwellsAndGaps(int, int, int*, int*, int*, float*):
qubfast/qubidl.cpp:1441:29: warning: conversion to int from std::vector<QUB_IdlSeg*>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function void QUB_IdlSegments::sampleDwells(int, int, double*, int, float*, float*):
qubfast/qubidl.cpp:1492:7: warning: unused variable at [-Wunused-variable]
qubfast/qubidl.cpp: In member function void QUB_IdlSegments::sampleDwells(int, int, float*, float*, int, float*, float*):
qubfast/qubidl.cpp:1544:7: warning: unused variable at [-Wunused-variable]
qubfast/qubidl.cpp: In member function int QUB_IdlSegments::insertPoints(int, int):
qubfast/qubidl.cpp:1684:23: warning: conversion to int from std::vector<QUB_IdlSeg*>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function int QUB_IdlSegments::joinSegs(int):
qubfast/qubidl.cpp:1756:29: warning: conversion to int from std::vector<QUB_IdlDwell>::size_type may alter its value [-Wconversion]
qubfast/qubidl.cpp: In member function QUB_IdlSegments::iterator QUB_IdlSegments::end():
qubfast/qubidl.cpp:1805:67: warning: conversion to int from std::vector<QUB_IdlSeg*>::size_type may alter its value [-Wconversion]
In file included from qubfast/qubidl.cpp:39:0:
qubfast/QUB_Freezer.h: In member function int QUB_FreezerSeries<T>::size() [with T = QUB_IdlChunk]:
qubfast/qubidl.cpp:739:27: instantiated from here
qubfast/QUB_Freezer.h:310:33: warning: conversion to int from std::vector<QUB_FreezerInfo<QUB_IdlChunk>*, std::allocator<QUB_FreezerInfo<QUB_IdlChunk>*> >::size_type may alter its value [-Wconversion]
qubfast/QUB_Freezer.h: In member function void QUB_Freezer<T>::checkOut(QUB_Freezer<T>::Info*, int) [with T = QUB_IdlChunk, QUB_Freezer<T>::Info = QUB_FreezerInfo<QUB_IdlChunk>]:
qubfast/QUB_Freezer.h:346:3: instantiated from T* QUB_FreezerSeries<T>::checkOut(int, int) [with T = QUB_IdlChunk]
qubfast/qubidl.cpp:722:50: instantiated from here
qubfast/QUB_Freezer.h:258:44: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubfast/QUB_Freezer.h: In member function void QUB_Freezer<T>::checkIn(QUB_Freezer<T>::Info*, bool) [with T = QUB_IdlChunk, QUB_Freezer<T>::Info = QUB_FreezerInfo<QUB_IdlChunk>]:
qubfast/QUB_Freezer.h:353:3: instantiated from void QUB_FreezerSeries<T>::checkIn(int, bool) [with T = QUB_IdlChunk]
qubfast/qubidl.cpp:724:28: instantiated from here
qubfast/QUB_Freezer.h:273:48: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
In file included from qubfast/QUB_Freezer.h:32:0,
from qubfast/qubidl.cpp:39:
qubfast/QUB_Heap.h: In member function int QUB_Heap<T>::size() [with T = QUB_FreezerInfoRec<QUB_IdlChunk>]:
qubfast/QUB_Freezer.h:148:5: instantiated from void QUB_Freezer<T>::freezeAsNeeded() [with T = QUB_IdlChunk]
qubfast/QUB_Freezer.h:238:3: instantiated from void QUB_Freezer<T>::addInfo(QUB_Freezer<T>::Info*) [with T = QUB_IdlChunk, QUB_Freezer<T>::Info = QUB_FreezerInfo<QUB_IdlChunk>]
qubfast/QUB_Freezer.h:320:3: instantiated from void QUB_FreezerSeries<T>::insert(int, T*) [with T = QUB_IdlChunk]
qubfast/qubidl.cpp:740:68: instantiated from here
qubfast/QUB_Heap.h:61:20: warning: conversion to int from std::vector<QUB_FreezerInfoRec<QUB_IdlChunk>, std::allocator<QUB_FreezerInfoRec<QUB_IdlChunk> > >::size_type may alter its value [-Wconversion]
qubfast/QUB_Heap.h: In member function void QUB_Heap<T>::erase(QUB_Heap<T>::iterator&) [with T = QUB_FreezerInfoRec<QUB_IdlChunk>, QUB_Heap<T>::iterator = __gnu_cxx::__normal_iterator<QUB_FreezerInfoRec<QUB_IdlChunk>*, std::vector<QUB_FreezerInfoRec<QUB_IdlChunk>, std::allocator<QUB_FreezerInfoRec<QUB_IdlChunk> > > >]:
qubfast/QUB_Heap.h:66:3: instantiated from void QUB_Heap<T>::erase(const T&) [with T = QUB_FreezerInfoRec<QUB_IdlChunk>]
qubfast/QUB_Freezer.h:247:6: instantiated from void QUB_Freezer<T>::remInfo(QUB_Freezer<T>::Info*) [with T = QUB_IdlChunk, QUB_Freezer<T>::Info = QUB_FreezerInfo<QUB_IdlChunk>]
qubfast/QUB_Freezer.h:254:4: instantiated from void QUB_Freezer<T>::checkOut(QUB_Freezer<T>::Info*, int) [with T = QUB_IdlChunk, QUB_Freezer<T>::Info = QUB_FreezerInfo<QUB_IdlChunk>]
qubfast/QUB_Freezer.h:346:3: instantiated from T* QUB_FreezerSeries<T>::checkOut(int, int) [with T = QUB_IdlChunk]
qubfast/qubidl.cpp:722:50: instantiated from here
qubfast/QUB_Heap.h:70:29: warning: conversion to int from long int may alter its value [-Wconversion]
mkdir -p obj/qubfast/
qubfast/qub_idlstats.cpp: In member function int qub_idlstats::add_up_means():
qubfast/qub_idlstats.cpp:146:29: warning: conversion to int from std::vector<double>::size_type may alter its value [-Wconversion]
qubfast/qub_idlstats.cpp: In member function int qub_idlstats::add_up_stds():
qubfast/qub_idlstats.cpp:160:28: warning: conversion to int from std::vector<double>::size_type may alter its value [-Wconversion]
qubfast/qub_idlstats.cpp: In function T median(std::vector<T>&) [with T = double]:
qubfast/qub_idlstats.cpp:151:53: instantiated from here
qubfast/qub_idlstats.cpp:55:23: warning: conversion to int from std::vector<double>::size_type may alter its value [-Wconversion]
mkdir -p obj/qubfast/
qubfast/ublas_matrixutil.cpp: In function void invm(boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&):
qubfast/ublas_matrixutil.cpp:53:22: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/ublas_matrixutil.cpp:57:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:57:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp: In function bool eigen_vals_vecs(boost::numeric::ublas::matrix<double>&, double*, double*, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&, std::ostream&):
qubfast/ublas_matrixutil.cpp:65:22: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/ublas_matrixutil.cpp:71:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:71:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:73:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:73:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp: In function void expm_eig(double*, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&, double, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&):
qubfast/ublas_matrixutil.cpp:85:25: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/ublas_matrixutil.cpp: In function void expm(boost::numeric::ublas::matrix<double>&, double, boost::numeric::ublas::matrix<double>&):
qubfast/ublas_matrixutil.cpp:96:22: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/ublas_matrixutil.cpp: In function bool sv_decomp(boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&):
qubfast/ublas_matrixutil.cpp:125:20: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/ublas_matrixutil.cpp:126:20: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/ublas_matrixutil.cpp: In function bool sv_decomp_inner(double**, int, int, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&):
qubfast/ublas_matrixutil.cpp:163:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:163:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:168:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:168:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:173:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_matrixutil.cpp:173:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from qubfast/ublas_matrixutil.cpp:43:0:
qubfast/ublas_plus.h: In function void matrix_from_arrays(M&, T**, int, int) [with M = boost::numeric::ublas::matrix<double>, T = double]:
qubfast/ublas_matrixutil.cpp:59:46: instantiated from here
qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h:45:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
mkdir -p obj/qubfast/
qubfast/max_ll_util.cpp: In function void BuildQ(int, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<int>&, boost::numeric::ublas::matrix<int>&, double*):
qubfast/max_ll_util.cpp:69:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/max_ll_util.cpp:69:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/max_ll_util.cpp: In function void QtoQe(boost::numeric::ublas::matrix<double>&, int*, double, boost::numeric::ublas::matrix<double>&):
qubfast/max_ll_util.cpp:119:19: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/max_ll_util.cpp:120:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/max_ll_util.cpp:120:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/max_ll_util.cpp:133:26: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubfast/max_ll_util.cpp:134:24: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubfast/max_ll_util.cpp:158:21: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubfast/max_ll_util.cpp:159:21: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
qubfast/max_ll_util.cpp: In function void QtoPe(boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::matrix<double>&):
qubfast/max_ll_util.cpp:202:19: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/max_ll_util.cpp:203:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from qubfast/max_ll_util.h:22:0,
from qubfast/max_ll_util.cpp:52:
qubfast/ublas_plus.h: In function void matrix_to_partition(boost::numeric::ublas::matrix<T>&, int, int, int*, int*, boost::numeric::ublas::matrix<T>&) [with T = double]:
qubfast/max_ll_util.cpp:137:77: instantiated from here
qubfast/ublas_plus.h:120:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h:120:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h: In function void fill_identity(boost::numeric::ublas::matrix<T>&) [with T = double]:
qubfast/max_ll_util.cpp:141:48: instantiated from here
qubfast/ublas_plus.h:140:21: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/ublas_plus.h:141:21: warning: conversion to int from boost::numeric::ublas::matrix<double>::size_type may alter its value [-Wconversion]
qubfast/ublas_plus.h: In function void matrix_from_partition(boost::numeric::ublas::matrix<T>&, int, int, int*, int*, boost::numeric::ublas::matrix<T>&) [with T = double]:
qubfast/max_ll_util.cpp:148:53: instantiated from here
qubfast/ublas_plus.h:130:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
qubfast/ublas_plus.h:130:3: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
mkdir -p obj/qubfast/
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:127:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
qubfast/lmmin.cpp:141:1: warning: deprecated conversion from string constant to char* [-Wwrite-strings]
mkdir -p obj/qubfast/
mkdir -p obj/qubfast/
qubfast/qub_dfpmin.cpp: In function bool dfp_lnsrch(fq::vector<double>&, double, fq::vector<double>&, fq::vector<double>&, fq::vector<double>&, double&, fq::vector<double>&, double, int&, int&, int&, int&, dfp_optimizable*):
qubfast/qub_dfpmin.cpp:287:27: warning: fold2 may be used uninitialized in this function [-Wuninitialized]
qubfast/qub_dfpmin.cpp:287:27: warning: f2 may be used uninitialized in this function [-Wuninitialized]
qubfast/qub_dfpmin.cpp:289:66: warning: alam2 may be used uninitialized in this function [-Wuninitialized]
mkdir -p obj/qubfast/
qubfast/lmmin_fit.cpp: In function void qub_lmmin_eval(double*, int, double*, qub_lmmin_state*, int*):
qubfast/lmmin_fit.cpp:79:32: warning: conversion to int from double may alter its value [-Wconversion]
qubfast/lmmin_fit.cpp:82:32: warning: conversion to int from double may alter its value [-Wconversion]
qubfast/lmmin_fit.cpp: At global scope:
qubfast/lmmin_fit.cpp:69:6: warning: unused parameter m_dat [-Wunused-parameter]
qubfast/lmmin_fit.cpp:103:6: warning: unused parameter n_par [-Wunused-parameter]
qubfast/lmmin_fit.cpp:103:6: warning: unused parameter par [-Wunused-parameter]
qubfast/lmmin_fit.cpp:103:6: warning: unused parameter m_dat [-Wunused-parameter]
qubfast/lmmin_fit.cpp:103:6: warning: unused parameter fvec [-Wunused-parameter]
qubfast/lmmin_fit.cpp:103:6: warning: unused parameter iflag [-Wunused-parameter]
qubfast/lmmin_fit.cpp:103:6: warning: unused parameter nfev [-Wunused-parameter]
qubfast/lmmin_fit.cpp: In function int qub_lmmin_fit(lmmin_CurveFunc, int, double*, double*, double*, int*, int, float*, float*, lmmin_IterFunc, callbk_reportfun, void*, int, double, float*, double*):
qubfast/lmmin_fit.cpp:130:38: warning: conversion to int from std::vector<int>::size_type may alter its value [-Wconversion]
mkdir -p obj/qubfast/
mkdir -p obj/qubfast/
g++ -shared -fPIC -lm -g -o libqubfast.so obj/qubfast/sampled_gaussian.o obj/qubfast/milutil.o obj/qubfast/decode_acquirefile_samples.o obj/qubfast/gettimeofday.o obj/qubfast/qub_kalman.o obj/qubfast/matrixutil.o obj/qubfast/qub_findloops.o obj/qubfast/qub_raster_samples.o obj/qubfast/qub_idlstim.o obj/qubfast/running_mean.o obj/qubfast/qub_doseresponse.o obj/qubfast/qub_constraints.o obj/qubfast/qub_simulate.o obj/qubfast/qub_dfilter.o obj/qubfast/qub_filter.o obj/qubfast/nmsimplex.o obj/qubfast/qubidl.o obj/qubfast/qub_idlstats.o obj/qubfast/ublas_matrixutil.o obj/qubfast/max_ll_util.o obj/qubfast/lmmin.o obj/qubfast/qub_adaptive_resample.o obj/qubfast/qub_dfpmin.o obj/qubfast/lmmin_fit.o obj/qubfast/lm_eval.o obj/qubfast/qubx_model.o
qubfast/matrixutil.cpp:void elmhes0(double** a, int n); // TODO - not yet used
qubx_single_molecule/qubx_idealize.cpp: P0_prev(0,s) = measure[prev_sc][s](y); // TODO: += or = ?
qubx_macroscopic/max_mac_ll.cpp:// TODO: video, email
common/matrix.h:/* TODO - unused ???
qubx_macroscopic/max_mac_ll.h:TODO: talk about amp/cond model and channel count
Makefile: -@for file in $(ALLFILES); do fgrep -H -e TODO -e FIXME $$file; done; true
Makefile:#TODO: windows build
Makefile:#TODO: test links between api and libs doc (..)
Makefile:#TODO: mac plugin
qubx/data_types.py:# TODO: scope respond to Signal: Scale
qubx/GTK.py: # TODO: this style disables pageup/dn single-clicks
qubx/fast/model.py:#TODO: qubx.fast.*constraint*
qubx/data_gpatch.py:## TODO: dispatch .dat to gpatch, patchmaster, binary, text
qubx/toolspace.py: ##if self.opengl_dimension: TODO read and composit texPrimary
qubx/toolspace.py: ##else: TODO composit surfCairo
qubx/fit.py: # TODO: VODE option
qubx/fit.py:#TODO: double declining exponential could be more efficient?
qubx/stimulus.py: ## TODO: enforce series names in test
qubx/ideal_tools.py: ### TODO: progress
qubx/remote_ctl.py: # TODO: modify behavior for older versions (oldest is 1.0)
qubx/dataGTK.py: # to table ### TODO: segments in columns (what about non-matching excluded regions?)
qubx/model.py: # TODO: use?
qubx/model.py: # TODO: save alongside, check, replace/move
qubx_single_molecule/max_inter_ll.py:# TODO: standardize output for diff-testing
qubx_single_molecule/max_subi_ll.py:# TODO: standardize output for diff-testing
qubx_single_molecule/qubx_single/idealize.py: # TODO: harmonize split segs' amp?
qubx_single_molecule/qubx_single/idealize.py: self.robot.model.Gleak = self.robot.Gleak ### TODO: move into model?
qubx_macroscopic/max_mac_ll.py: data = Data(1) # TODO: test 0 stim signals
qubx_macroscopic/max_mac_ll.py: data = Data(Nstimsig) # TODO: test 0 stim signals