All pastes #1770628 Raw Edit

s032082

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#1770628 ·published 2010-01-29 11:32 UTC
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$ mpirun -np 4 gpaw-python gpaw/test/lcao_density.pygpaw-DEBUG modegpaw-DEBUG modegpaw-DEBUG modegpaw-DEBUG mode  ___ ___ ___ _ _ _   |   |   |_  | | | |  | | | | | . | | | |  |__ |  _|___|_____|  0.7.5827 |___|_|             User: s032082@thul.fysik.dtu.dkDate: Fri Jan 29 12:32:18 2010Arch: x86_64Pid:  27570Dir:  /home/niflheim/s032082/thul/lib64/python/gpawase:   /home/niflheim/s032082/thul/lib/python/ase  version:  3.3.0.1328numpy: /opt/numpy/1.3.0/1.el5.fys.gfortran.4.1.2.python2.4.acml.4.0.1.acml.4.0.1/lib64/python2.4/site-packages/numpyunits: Angstrom and eVUsing default value for grid spacing.Memory estimate---------------Calculator  30.16 MiB    Initial overhead  22.01 MiB    Density  3.01 MiB        Arrays  0.97 MiB        Localized functions  0.34 MiB        Mixer  0.21 MiB        Interpolator  1.50 MiB    Hamiltonian  4.71 MiB        Arrays  0.63 MiB        Restrictor  0.79 MiB        XC 3D grid  0.30 MiB        Poisson  2.97 MiB        vbar  0.03 MiB    Wavefunctions  0.43 MiB        C [qnM]  0.00 MiB        S, T [2 x qmm]  0.00 MiB        P [aqMi]  0.00 MiB        TCI  0.00 MiB        BasisFunctions  0.43 MiB        Eigensolver  0.00 MiBTraceback (most recent call last):  File "../../trunk_gpaw/gpaw/test/lcao_density.py", line 40, in ?    wfs.calculate_density_matrix(kpt.f_n, kpt.C_nM, rho_MM)Traceback (most recent call last):  File "../../trunk_gpaw/gpaw/test/lcao_density.py", line 40, in ?    wfs.calculate_density_matrix(kpt.f_n, kpt.C_nM, rho_MM)  File "/home/niflheim/s032082/thul/lib64/python/gpaw/wavefunctions.py", line 557, in calculate_density_matrix  File "/home/niflheim/s032082/thul/lib64/python/gpaw/wavefunctions.py", line 557, in calculate_density_matrix    rho_MM = self.od.calculate_density_matrix(f_n, C_nM, rho_MM)    rho_MM = self.od.calculate_density_matrix(f_n, C_nM, rho_MM)  File "/home/niflheim/s032082/thul/lib64/python/gpaw/blacs.py", line 735, in calculate_density_matrix    Cf_Mn = C_nM.T.conj() * f_nTypeError: unsupported operand type(s) for *: 'float' and 'NoneType'GPAW CLEANUP (node 2): exceptions.TypeError occurred.  Calling MPI_Abort!  File "/home/niflheim/s032082/thul/lib64/python/gpaw/blacs.py", line 735, in calculate_density_matrix    Cf_Mn = C_nM.T.conj() * f_nTypeError: unsupported operand type(s) for *: 'float' and 'NoneType'GPAW CLEANUP (node 3): exceptions.TypeError occurred.  Calling MPI_Abort!--------------------------------------------------------------------------MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD with errorcode 42.NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.You may or may not see output from other processes, depending onexactly when Open MPI kills them.----------------------------------------------------------------------------------------------------------------------------------------------------mpirun has exited due to process rank 2 with PID 27572 onnode thul.fysik.dtu.dk exiting without calling "finalize". This mayhave caused other processes in the application to beterminated by signals sent by mpirun (as reported here).--------------------------------------------------------------------------[thul.fysik.dtu.dk:27567] 1 more process has sent help message help-mpi-api.txt / mpi-abort[thul.fysik.dtu.dk:27567] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages