[ 97%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o
[ 97%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o
[ 97%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o
[ 98%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
[ 98%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o
Linking CXX static library ../lib/libgatbcore.a
[ 98%] Built target gatbcore-static
Scanning dependencies of target dbgh5
Scanning dependencies of target dbginfo
Scanning dependencies of target kissnp2
[ 98%] [ 99%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o
Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o
[ 99%] [100%] [100%] [100%] Building CXX object tools/kissnp2/CMakeFiles/kissnp2.dir/src/main.cpp.o
Building CXX object tools/kissnp2/CMakeFiles/kissnp2.dir/src/Kissnp2.cpp.o
Building CXX object tools/kissnp2/CMakeFiles/kissnp2.dir/src/Bubble.cpp.o
Building CXX object tools/kissnp2/CMakeFiles/kissnp2.dir/src/Filter.cpp.o
In file included from /home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Kissnp2.cpp:22:
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.hpp:211: error: âbreadth_first_queueâ was not declared in this scope
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.hpp:211: error: â>>â should be â> >â within a nested template argument list
In file included from /home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:21:
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.hpp:211: error: âbreadth_first_queueâ was not declared in this scope
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.hpp:211: error: â>>â should be â> >â within a nested template argument list
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp: In member function âvoid BubbleFinder::start_indel_prediction(Bubble&)â:
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:191: error: â.â cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:191: error: âBubbleFinder::breadth_first_queueâ cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:191: error: a function call cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:191: error: â>>â should be â> >â within a nested template argument list
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:191: error: âclass std::queue<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::deque<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >â has no member named âswapâ
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:204: error: â.â cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:204: error: âBubbleFinder::breadth_first_queueâ cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:204: error: a function call cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:204: error: â>>â should be â> >â within a nested template argument list
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:204: error: âclass std::queue<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::deque<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >â has no member named âswapâ
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:236: error: â.â cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:236: error: âBubbleFinder::breadth_first_queueâ cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:236: error: a function call cannot appear in a constant-expression
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:236: error: â>>â should be â> >â within a nested template argument list
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:236: error: âclass std::queue<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::deque<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<gatb::core::debruijn::impl::Node, std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > >â has no member named âswapâ
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp: In member function âvoid BubbleFinder::finish(Bubble&)â:
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:548: error: âto_stringâ is not a member of âstdâ
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:548: error: âto_stringâ is not a member of âstdâ
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:556: error: âto_stringâ is not a member of âstdâ
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:556: error: âto_stringâ is not a member of âstdâ
/home/adrian/programs/DiscoSNP++-2.1.2-Source/tools/kissnp2/src/Bubble.cpp:556: error: âto_stringâ is not a member of âstdâ
make[2]: *** [tools/kissnp2/CMakeFiles/kissnp2.dir/src/Kissnp2.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [tools/kissnp2/CMakeFiles/kissnp2.dir/src/Bubble.cpp.o] Error 1
make[1]: *** [tools/kissnp2/CMakeFiles/kissnp2.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
Linking CXX executable ../bin/dbginfo
Linking CXX executable ../bin/dbgh5
[100%] Built target dbginfo
[100%] Built target dbgh5
make: *** [all] Error 2